This is a general repository that contains code for all IBPA papers where the computational part is an analysis.

Each folder under the root directory corresponds to a single paper. For detailed information about each paper, please read the README file under each folder.

• 2020_Pereira_et_al: Pereira, Beatriz Merchel Piovesan, Xiaokang Wang, and Ilias Tagkopoulos. “A systems analysis of E. coli short and long-term transcriptomic response to biocides.” Applied and Environmental Microbiology (2020): AEM.00708-20. doi: 10.1128/AEM.00708-20 (link)
• 2020_Artificial_Meat: Risner, Derrick, Fangzhou Li, Jason Fell, Sara Pace, Ilias Tagkopoulos, Justin Siegel, and Edward Spang. "Preliminary techno-economic assessment of animal cell-based meat." Foods (2021). doi: 10.3390/foods10010003 (link)
• 2021_matson_et_al: Matson, Morgan M., Mateo M. Cepeda, Angela Zhang, Anna E. Case, Erol S. Kavvas, Xiaokang Wang, Austin L. Carroll, Ilias Tagkopoulos, and Shota Atsumi. "Adaptive laboratory evolution for improved tolerance of isobutyl acetate in Escherichia coli." Metabolic Engineering 69 (2022): 50-58. doi: 10.1016/j.ymben.2021.11.002 (link)

• 2020_Chan_et_al: CDTFA Tax Project. To be updated once reference is available.