Lung cancer 10X analysis

• All the raw data of scRNA-seq have been deposited in the https://pms.cd120.com/wcd01/index.html.

• All raw counts, TPM matrix, the Seurat object including expression matrix and cell annotation information of single-cell RNA-seq are available in http://lungcancer.chenlulab.com.

1. 0_Preprocessing: Python scripts to call CellRanger, velocyto and scripts to check the sequencing quality

2. 1-Figures:Scripts to perform specific analysis and make figures

3. 2-Others: Some scripts that related to this project

4. bak: Script used in the exploration phase