Name		Name	Last commit message	Last commit date
Latest commit History 33 Commits
R_scripts		R_scripts
THESIS_GAUSSIAN		THESIS_GAUSSIAN
data		data
AP_CLUSTERING_REPRODUCE.py		AP_CLUSTERING_REPRODUCE.py
AP_clustering.py		AP_clustering.py
EVEN_1500_1500_TSS_SEPERATE_SELECTIVE.py		EVEN_1500_1500_TSS_SEPERATE_SELECTIVE.py
EVEN_1500_300_GENE_SEPERATE_SELECTIVE.py		EVEN_1500_300_GENE_SEPERATE_SELECTIVE.py
EVEN_300_300_GENE_TOGETHER_SELECTIVE.py		EVEN_300_300_GENE_TOGETHER_SELECTIVE.py
FULL_1500_1500_TSS_SEPERATE_SELECTIVE.py		FULL_1500_1500_TSS_SEPERATE_SELECTIVE.py
FULL_1500_300_GENE_SEPERATE_SELECTIVE.py		FULL_1500_300_GENE_SEPERATE_SELECTIVE.py
FULL_300_300_GENE_TOGETHER_SELECTIVE.py		FULL_300_300_GENE_TOGETHER_SELECTIVE.py
GAUSSIAN_300_300_GENE_TOGETHER_DYSTANCE.py		GAUSSIAN_300_300_GENE_TOGETHER_DYSTANCE.py
GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE.py		GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE.py
GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_2.py		GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_2.py
GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_3.py		GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_3.py
GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_4.py		GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_4.py
GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_5.py		GAUSSIAN_300_300_GENE_TOGETHER_SELECTIVE_5.py
Gaussian_probs.py		Gaussian_probs.py
LDA_analysis_2.py		LDA_analysis_2.py
MAP_function_clean.py		MAP_function_clean.py
MAP_invoker.py		MAP_invoker.py
ODD_1500_1500_TSS_SEPERATE_SELECTIVE.py		ODD_1500_1500_TSS_SEPERATE_SELECTIVE.py
ODD_1500_300_GENE_SEPERATE_SELECTIVE.py		ODD_1500_300_GENE_SEPERATE_SELECTIVE.py
ODD_300_300_GENE_TOGETHER_SELECTIVE.py		ODD_300_300_GENE_TOGETHER_SELECTIVE.py
PREPROCESSING_DATA_MACS_TIMESERIES_CREATION_SCRIPTS.zip		PREPROCESSING_DATA_MACS_TIMESERIES_CREATION_SCRIPTS.zip
PR_top_MAP_dots_alternative_domain (copy).py		PR_top_MAP_dots_alternative_domain (copy).py
PR_top_MAP_dots_alternative_domain.py		PR_top_MAP_dots_alternative_domain.py
PR_top_MAP_dots_alternative_domain_fig_size_test.py		PR_top_MAP_dots_alternative_domain_fig_size_test.py
README.md		README.md
TOP_FDR_PR_gene_list_clean.py		TOP_FDR_PR_gene_list_clean.py
TOP_FDR_PR_table_clean.py		TOP_FDR_PR_table_clean.py
TOP_PR_interaction_plotter_clean.py		TOP_PR_interaction_plotter_clean.py
allocator.py		allocator.py
chrom_specific_negative_interactions.py		chrom_specific_negative_interactions.py
classificator_clean.py		classificator_clean.py
classifiers_clean.py		classifiers_clean.py
clustering_figures.py		clustering_figures.py
config_variables.py		config_variables.py
convergence_checker.py		convergence_checker.py
correl_distance_extractor_clean.py		correl_distance_extractor_clean.py
filters_clean.py		filters_clean.py
finite_MOG_object_orientated_1d_times_n_case_log_calc_prob_visited_float64_distance_low_distances_active_promoters_clean.py		finite_MOG_object_orientated_1d_times_n_case_log_calc_prob_visited_float64_distance_low_distances_active_promoters_clean.py
finite_MOG_object_orientated_1d_times_n_case_log_calc_prob_visited_float64_distance_low_distances_active_promoters_clean_test.py		finite_MOG_object_orientated_1d_times_n_case_log_calc_prob_visited_float64_distance_low_distances_active_promoters_clean_test.py
gene_annotation.py		gene_annotation.py
generator_executor.py		generator_executor.py
graph_plotter_all_PR_PCA_true_only_MAP_per_million_multi_chroms_multi_filters_non_domain_inter_background_pro_dist_alt_mixer_cleaned.py		graph_plotter_all_PR_PCA_true_only_MAP_per_million_multi_chroms_multi_filters_non_domain_inter_background_pro_dist_alt_mixer_cleaned.py
hg19.tar.gz		hg19.tar.gz
interacting_domain.py		interacting_domain.py
interacting_domain_clean.py		interacting_domain_clean.py
interacting_filter_hist_test.py		interacting_filter_hist_test.py
interaction_checker_changed_clean.py		interaction_checker_changed_clean.py
interaction_finder_wrapper.py		interaction_finder_wrapper.py
interaction_generator_clean.py		interaction_generator_clean.py
iter_loadtxt.py		iter_loadtxt.py
kern_density_est.py		kern_density_est.py
non_ER_promoters_clean.py		non_ER_promoters_clean.py
non_proximal_enhancer_clean.py		non_proximal_enhancer_clean.py
number_of_interacting_enhancers.py		number_of_interacting_enhancers.py
orderer_clean.py		orderer_clean.py
overlapper_hg19_clean.py		overlapper_hg19_clean.py
parametrisations.py		parametrisations.py
parametrisations_supplementary.py		parametrisations_supplementary.py
pararell_methods.py		pararell_methods.py
plot_histograms_figures.py		plot_histograms_figures.py
plot_histograms_figures_MOG.py		plot_histograms_figures_MOG.py
prepare_interactions_clean.py		prepare_interactions_clean.py
prepare_upper_and_lower_bounds_for_priors.py		prepare_upper_and_lower_bounds_for_priors.py
prior_histograms_cl.py		prior_histograms_cl.py
prior_producer.py		prior_producer.py
read_me.txt		read_me.txt
run_GENE_SEPERATE.sh		run_GENE_SEPERATE.sh
run_GENE_TOGETHER.sh		run_GENE_TOGETHER.sh
run_TSS_SEPERATE.sh		run_TSS_SEPERATE.sh
run_clustering_figures.sh		run_clustering_figures.sh
save_prior_unfinished.py		save_prior_unfinished.py
script_EVEN_TSS.py		script_EVEN_TSS.py
script_python_analys_PR.py		script_python_analys_PR.py
script_python_analys_PR_comparison.py		script_python_analys_PR_comparison.py
selected_combinations.py		selected_combinations.py
smooth_correl.py		smooth_correl.py
smooth_priors.py		smooth_priors.py
smooth_priors_domain.py		smooth_priors_domain.py
smooth_priors_non_domain.py		smooth_priors_non_domain.py
testing_MOG_distance.py		testing_MOG_distance.py
testing_MOG_vs_distance_2.py		testing_MOG_vs_distance_2.py
time_series_prepare_filter.py		time_series_prepare_filter.py

ManchesterBioinference/EP_Bayes

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