A work in progress to extract the useful bits of the original Java implementation of Ramdog and rewrite it in Python.

If you do not have Python installed on your computer, please install python 3.5 with [Anaconda] (https://www.continuum.io/downloads). If you have the choice, please please please do not install python 2.

After you have installed Python, I would suggest installing pyspots with the following command:

pip install pyspots

If the above command does not work, you will need to clone the git repository from github and install manually. Do this:

git clone https://github.com/themartinlab/pyspots
cd pyspots
python setup.py install

Then make sure it was installed

cd
python -c "import pyspots; print(pyramdog.__version__)"

If the above prints out a version number like "v0.0.1" then you have successfully installed pyspots. If you get an exception, please contact me via github [here] (https://github.com/themartinlab/pyspots/issues).

pyspots is meant to be used on the output files from the spotpicking algorithms in to the Java implementation of [Ramdog] (https://github.com/themartinlab/ramdog).

• Automatic fitting of individual spotpicking output data

git clone https://github.com/themartinlab/pyspots
cd pyspots
python setup.py develop

And then run the test suite with py.test to make sure that it was installed correctly.