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TreeMazeAnalyses

Alexander Gonzalez, Lisa M Giocomo. Parahippocampal neurons encode task-relevant information for goal-directed navigation. eLife2024;13:RP85646 DOI: https://doi.org/10.7554/eLife.85646.4

Pre-print

https://www.biorxiv.org/content/10.1101/2022.12.15.520660v1

Processed Timeseries by session data on Dandi:

https://dandiarchive.org/dandiset/000405

Additional Metadata Files on the metadata folder.

Installation on development

  1. Download zip or git clone.

  2. Create a conda environment running python 3.6 '$ conda create --name new_env python=3.6'

  3. activate the environment: '$ souce activate new_env'

  4. change directory to the clonned treemaze directory and install: '$ cd TMA' '$ python setup.py develop'

  5. install requirements '$ pip install -r requirements.txt'

  6. copy notebooks outside of package, eg: '$ cp ~Documents/TMA/Analyses/Notebooks/* ~/Documents/Notebooks/*'

  7. use it! open python and try: import TMA

  8. Depending on your setup, link to a google drive for access to the data: https://towardsdatascience.com/integrate-jupyterlab-with-google-drive-98d13e340c63

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