This project aims at implementing Biclustering methods to link genes with heterogeneous data using Mosek Python API.
Before you begin, ensure you have met the following requirements:
- You have installed a version of Python > 2.6.
- SDP resolution by Mosek
- K-means constrained from "Data Clustering with Cluster Size Constraints Usinga Modifiedk-means Algorithm" article by Nuwan Ganganath†, Chi-Tsun Cheng, and Chi K. Tse.
To use the SDP biclustering algorithm, follow these steps:
To load your data:
Replace I=Instance.LoadInstance("save3.txt")
with your text file representing your clusters matrixes in SDP_21.py
To run the algorithm on your data:
python SDP_21.py
Authors :
- Alexis Le Glaunec
- Geoffroy Zardi
This project was realized in collaboration with researchers from the university of Evry :
- Farida Zehraoui
- Eric Angel