msm_analysis_scripts

Some python scripts for building and analyzing MSMs (Markov State Models)

Name		Name	Last commit message	Last commit date
Latest commit History 702 Commits
Opsin_Structure		Opsin_Structure
hDAT_BMC_Biology		hDAT_BMC_Biology
hDAT_Na_SREP		hDAT_Na_SREP
mod_scripts		mod_scripts
utils		utils
README.md		README.md
cal_cc_dists.py		cal_cc_dists.py
cal_cc_dists_hydrophobic.py		cal_cc_dists_hydrophobic.py
cal_cc_dists_polar.py		cal_cc_dists_polar.py
get_tica_obj_simple.py		get_tica_obj_simple.py
plot_tica_evs.py		plot_tica_evs.py
project_on_tica_simple.py		project_on_tica_simple.py
trajs_on_tica.py		trajs_on_tica.py

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Opsin_Structure

Opsin_Structure

hDAT_BMC_Biology

hDAT_BMC_Biology

hDAT_Na_SREP

hDAT_Na_SREP

mod_scripts

mod_scripts

utils

utils

README.md

README.md

cal_cc_dists.py

cal_cc_dists.py

cal_cc_dists_hydrophobic.py

cal_cc_dists_hydrophobic.py

cal_cc_dists_polar.py

cal_cc_dists_polar.py

get_tica_obj_simple.py

get_tica_obj_simple.py

plot_tica_evs.py

plot_tica_evs.py

project_on_tica_simple.py

project_on_tica_simple.py

trajs_on_tica.py

trajs_on_tica.py

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