MPAthic is a software package for analyzing data from a variety massively parallel assays, including Sort-Seq assays, Massively Parallel Reporter assays, and Deep Mutational Scanning assays. MPAthic is a python API.

MPAthic can be installed from PyPI by executing

pip install mpathic

• Documentation: http://mpathic.readthedocs.io/en/latest/
• Github: https://github.com/atareen/mpathic

MPAthic is currently written in Python 2.7.10. It will be updated to python 3 soon. Installation currently requires a number of other Python packages:

• Babel==2.5.3
• backports.functools-lru-cache==1.5
• biopython==1.71
• certifi==2018.4.16
• chardet==3.0.4
• cvxopt==1.1.9
• cycler==0.10.0
• Cython==0.28.1
• docutils==0.14
• idna==2.6
• imagesize==1.0.0
• kiwisolver==1.0.1
• MarkupSafe==1.0
• matplotlib==2.2.2
• mpmath==1.0.0
• numpy==1.14.2
• packaging==17.1
• pandas==0.22.0
• Pygments==2.2.0
• pymc==2.3.6
• pyparsing==2.2.0
• python-dateutil==2.7.2
• pytz==2018.4
• requests==2.18.4
• scikit-learn==0.19.1
• scipy==1.0.1
• six==1.11.0
• sklearn==0.0
• snowballstemmer==1.2.1
• subprocess32==3.2.7
• typing==3.6.4
• urllib3==1.22
• weblogo==3.6.0