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Package to analyze EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

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bachsh/wonambi

 
 

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WONAMBI

Package to analysis EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

Features

  • Can read files of format:
    • Axon (.abf, ABF2 only)
    • Blackrock (.nev, .ns2, .ns3, .ns5)
    • BCI2000 (.dat)
    • European Data Format (.edf)
    • EGI MFF (.mff)
    • Fieldtrip (.mat)
    • mne FIFF (.fiff)
  • Interface for Sleep Scoring
  • Computes frequency analysis (spectrogram), time-frequency analysis (Morlet wavelet)
  • Pure Python

Installation

Install wonambi by running:

pip install wonambi

See Installation for details

If you want to scroll recordings and do some sleep scoring (requires PyQt5)

wonambi

Run it!

From the command line, simply type:

wonambi

To open a dataset directly, add the full path to the file you want to open:

wonambi /home/me/sleep_recordings.edf

Documentation

See Documentation

Change Log

See Change Log

Requirements

  • Python 3.6
  • numpy
  • scipy

Optional Requirements

  • PyQt5 (optional for sleep scoring GUI)
  • nibabel (optional to read freesurfer)
  • h5py (optional to read FieldTrip Matlab files)

Status

image

image

License

The project is licensed under the GPLv3 license. Other licenses available upon request.

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Package to analyze EEG, ECoG and other electrophysiology formats. It allows for visualization of the results and for a GUI that can be used to score sleep stages.

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