bioinf/dna_compression
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
Put your *.fastq file to data directory and use compress.py script to split and squeeze it: $ mv /tmp/ERR001268.filt.fastq ../data/ $ python compress.py ../data/ERR001268.filt.fastq All temporary files will be created in ../data/ One can use "test.py" script for automated testing. For this write file "test.lst" like here ## Filename Quick flag cond_huffman ../data/tmp2.tmp True True ../data/tmp2.tmp True False ../data/tmp.tmp True False ../data/ERR001268.filt.fastq False True and run "test.py" for testing or "test.py -q" for quick testing.
About
Compression of DNA reads, single or paired
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published