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Graphic user interface for TomoPy used by APS GSECARS 13BM

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TomoPy_GUI

Written by B.M.Gibson with significant help from Matt Newville and Doga Gursoy.
TomoPy_GUI is a simple interface for reconstructing synchrotron tomography datasets using TomoPy.
Currently, this UI is optimized for APS 13-BM netcdf datasets, but future interations will expand to accommodate data formats.
More information about TomoPy can be found at https://github.com/tomopy/tomopy.

Dependencies

Users will need to install the following packages.

  • conda install -c dgursoy tomopy
  • conda install -c gsecars wxmplot
  • conda install -c conda-forge wx
  • conda install -c conda-forge os
  • conda install -c conda-forge glob
  • conda install -c conda-forge time
  • conda install -c conda-forge gc
  • conda install -c conda-forge scipy
  • conda install -c conda-forge skimage
  • conda install -c conda-forge netCDF4
  • conda install -c conda-forge dxchange
  • conda install -c conda-forge numpy

Known issues include:

  • Entropy centering method performs poorly for most datasets. Best to use default Vghia Vo centering method. Future updates to Entropy will come from either this UI or TomoPy.
  • Some features slower than desired (movie, data conversion, TomoPy algorithms other than gridrec).

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Graphic user interface for TomoPy used by APS GSECARS 13BM

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