ddbio-variantstore

Variant Storage Service and Database that integrates with the DDBIO workflows tools

Install

Download and Install the DDB-Core library

git clone https://github.com/dgaston/ddb-core
cd ddb-core
python setup.py install

pip install -r requirements.txt

Name		Name	Last commit message	Last commit date
Latest commit History 648 Commits
DevScripts		DevScripts
Misc_and_Old		Misc_and_Old
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
add_data.py		add_data.py
add_data_coveragestore.py		add_data_coveragestore.py
add_data_variantstore.py		add_data_variantstore.py
add_data_variantstore_brca.py		add_data_variantstore_brca.py
add_filtered_data_variantstore.py		add_filtered_data_variantstore.py
coverage_tracking_analysis.py		coverage_tracking_analysis.py
coverage_tracking_by_sample.py		coverage_tracking_by_sample.py
coveragestore.py		coveragestore.py
create_coverage_database.py		create_coverage_database.py
create_excel_report.py		create_excel_report.py
create_logs_database.py		create_logs_database.py
create_qc_database.py		create_qc_database.py
create_sample_report_dual_library.py		create_sample_report_dual_library.py
create_testing_variants_database.py		create_testing_variants_database.py
create_variants_database.py		create_variants_database.py
delete_data_coveragestore.py		delete_data_coveragestore.py
delete_data_variantstore.py		delete_data_variantstore.py
do_variant_counts.py		do_variant_counts.py
logstore.py		logstore.py
pipelinestore.py		pipelinestore.py
qcstore.py		qcstore.py
report.py		report.py
report_direct_vcf.py		report_direct_vcf.py
report_direct_vcf_low_support_filtered.py		report_direct_vcf_low_support_filtered.py
report_improved.py		report_improved.py
requirements.txt		requirements.txt
sample_coverage_by_amplicon_reports_from_cassandra.py		sample_coverage_by_amplicon_reports_from_cassandra.py
sample_reports_by_query_var.py		sample_reports_by_query_var.py
samplestore.py		samplestore.py
utils.py		utils.py
validation_reports.py		validation_reports.py
variant_analysis.py		variant_analysis.py
variant_pos_samples_report.py		variant_pos_samples_report.py
variant_pos_type_samples.py		variant_pos_type_samples.py
variant_tracking_analysis.py		variant_tracking_analysis.py
variantstore.py		variantstore.py

License

GastonLab/ddb-datastore

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