Skip to content

dilawar/jugnoo

Repository files navigation

ROI Locator

Jugnoo is Hindi/Urdu word for a firefly.

These sets of scripts process calcium imaging data (tiff format) to locate the possible interesting regions which might be firing neurons.

These scripts are very sensitive to paramters in config.py files. These paramters are not likely to me make much sense to general user. If you think that these script might do what you are looking for, do write an email for details. Or may be open a ticket, it will motivate me to write the documentation (with a lot of grammar and spelling mistakes).

For neural activity like the following (click to see the youtube video)

Example

Calcium activity

These script detect the following region of interest:

More examples and instrcution on how to use these script can be found on Wiki [Work in progress].