- Clone the repo
git clone git@github.com:dujm/Health_PrecisionMedicine.git
# Remove my git directory
cd Health_PrecisionMedicine
rm -r .git/
# Create a src/ dir to save models
mkdir src
# Create a data/ to download and save datasets
mkdir data
- Install packages
pip install -r requirements.txt
- Download the Kaggle dataset
-
Or install Kaggle API and run:
cd data # Download data kaggle competitions download msk-redefining-cancer-treatment
├── LICENSE
├── README.md
├── requirements.txt
├── data (Not uploaded to GitHub)
│ ├── features
│ ├── history
│ ├── processed
│ └── raw
│ ├── test_text
│ ├── test_variants
│ ├── training_text
│ ├──training_variants
│ └── not_used
├── notebooks
│ ├── 01EDA.ipynb
│ ├── 02Test_Sample_Data.ipynb
│ ├── 03BoW_Full_Data.ipynb
│ ├── 04Word2Vec_LSTM_Full_Data.ipynb
│ ├── 05Doc2Vec_Keras_Full_Data.ipynb
│ └── utils_functions.py
├── reports
│ ├── figures
│ └── materials
├── src (Not uploaded to GitHub)
│ ├── doc2vec
└── └── word2vec