GitHub - felixhorns/BCellClassSwitching: Scripts associated with Horns et al. Elife 2016

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Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
analysis		analysis
igh_cluster		igh_cluster
igh_makedb		igh_makedb
igh_preprocess		igh_preprocess
igh_tree		igh_tree
LICENSE		LICENSE
README		README

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Scripts for preprocessing raw sequencing reads (igh_preprocess), finding clonal lineages (igh_cluster), creating a MySQL database of sequences and lineages (igh_makedb), and reconstructing histories of clonal lineages (igh_tree).  These are intended to be run using Snakemake (https://bitbucket.org/snakemake/snakemake/wiki/Home) via Snakefile.py.

Examples of analysis scripts in the form of iPython notebooks for generating the main figures are provided (analysis).

Copyright Felix Horns 2016.
Available under the MIT License.