3D Slicer module as a GUI for NiftyReg, an open-source software for efficient medical image registration developed by Marc Modat at the University College London.
In a terminal, run:
mkdir ~/git
cd ~/git
git clone https://github.com/fepegar/slicer-niftyreg.git
mkdir ~/bin
cd ~/bin
ln -s $(which reg_aladin)
ln -s $(which reg_f3d)
In ~/.slicerrc.py:
import os
import qt
moduleFactory = slicer.app.moduleManager().factoryManager()
dirs = ['~/git/slicer-niftyreg']
dirs = filter(os.path.isdir, [os.path.expanduser(d) for d in dirs])
for d in dirs:
for fn in os.listdir(d):
if not fn.endswith('.py'):
continue
fp = os.path.join(d, fn)
moduleFactory.registerModule(qt.QFileInfo(fp))
moduleFactory.loadModules([os.path.splitext(fn)[0]])