This package contains utilities for day-to-day tasks in yeast genomics.
In addition to the Python standard library, this package depends on the following:
In particular, the YAML submodule of this package contains slightly modified versions of several classes from Kirill Simonov's PyYAML package, and the PyYAML software license is included in the YAML submodule file.
Also, VCF filters use the PyVCF filter framework, and Unicode CSV data are processed using classes based on the recipe in the CSV module docs.
To install this package, navigate to the package root directory and input the command:
python setup.py install
This will install GACTutil and any dependencies.
Selected functions can be run from the command line using the package entry point 'gaction' as follows:
gaction <command> <modifier> [<modifier> ...] [-h] ...
...where <command> is the main command, which is modified by one or more <modifier> subcommands.
To see options for a command, use the help flag (-h).
Please submit any issue on the GACTutil GitHub repository.