msprime

msprime is a Python API and command line interface for simulating the coalescent with recombination. Please see the documentation for further information and installation instructions.

If you would like to help make msprime better, please see the developer documentation to get started.

If you use msprime in your work, please cite the PLOS Computational Biology paper. See here for full citation details.

Name		Name	Last commit message	Last commit date
Latest commit History 1,769 Commits
data		data
docs		docs
lib		lib
msprime		msprime
requirements		requirements
tests		tests
.codecov.yml		.codecov.yml
.gitignore		.gitignore
.travis.yml		.travis.yml
CHANGELOG.rst		CHANGELOG.rst
CITATION.rst		CITATION.rst
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.md		README.md
README.txt		README.txt
UI_update.md		UI_update.md
_msprimemodule.c		_msprimemodule.c
algorithms.py		algorithms.py
appveyor.yml		appveyor.yml
circle.yml		circle.yml
ez_setup.py		ez_setup.py
large-example.py		large-example.py
msp_dev.py		msp_dev.py
mspms_dev.py		mspms_dev.py
setup.py		setup.py
stress_lowlevel.py		stress_lowlevel.py
verification.py		verification.py

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