ChiLin is a pipeline for ChIP-seq data written in pure Python. It provides workflow of mapping(Bowtie), peak calling(MACS2), Cis-elementary visualization(CEAS) and motif finding(MDSeqpos). Moreover, it provides quality control tools for reads, replication and peaks. It's intended to do more things with less configuration.

This is an early-stage snapshot of ChiLin. To get the latest version of Chilin, please go to this repository