phylo_tools

python tools for phylogenetic inference

Simple, standalone scripts for doing various useful things to alignment and tree files. Scripts also designed for converting file types in phylogenetic pipelines.

Name		Name	Last commit message	Last commit date
Latest commit History 8 Commits
structural-anc		structural-anc
.gitignore		.gitignore
.tmp		.tmp
LICENSE		LICENSE
README.md		README.md
altr2standard.py		altr2standard.py
blastTools.py		blastTools.py
calcDistanceMatrix.py		calcDistanceMatrix.py
compareAncestors.py		compareAncestors.py
convertALTR.py		convertALTR.py
createCloseAncestors.py		createCloseAncestors.py
createNameFiles.py		createNameFiles.py
editNames.py		editNames.py
encode_gaps_as_characters.py		encode_gaps_as_characters.py
extractMrBayesTrees.py		extractMrBayesTrees.py
fasta2phylip.py		fasta2phylip.py
fastaConsensus.py		fastaConsensus.py
fastaScrambler.py		fastaScrambler.py
fastaSeqLength.py		fastaSeqLength.py
fastaSubset.py		fastaSubset.py
findDiagnosticResidues.py		findDiagnosticResidues.py
find_sequence_neighbors.py		find_sequence_neighbors.py
install.sh		install.sh
parseAncestor.py		parseAncestor.py
phyloBase.py		phyloBase.py
renumberAncestor.py		renumberAncestor.py
reverseBlast.py		reverseBlast.py
sampleAncestorPosterior.py		sampleAncestorPosterior.py
sampleAncestorPosteriorForLogo.py		sampleAncestorPosteriorForLogo.py

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harmsm/phylo_tools

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