The Microscopy Image Manger is a proof of concept solution for microscopy image management based on the EMRrest service and IObox tools.
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Install ERMrest
See https://github.com/informatics-isi-edu/ermrest
Use the
master
branch rather than releases. -
Install Globus Online Transfer Client API
sudo easy_install globusonline-transfer-api-client
-
Install and setup the additional REST services
-
Install printer services
cd printer && sudo python setup.py install
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Setup the database
See configuration guide.
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Install the webcli
rsync -av --delete --exclude=".*" ./webcli /var/www/html/
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Install Zoomify Viewer
Note: You will need a licensed verison of the Zoomify HTML5 Viewer. For more information, visit the Zoomify website.
You will need to copy over the
ZoomifyImageViewer.js
and theAssets/
directory normally located in the same directory of the Zoomify distribution zip file.mkdir -p /var/www/html/webcli/zoomify cp /path/to/ZoomifyImageViewer /var/www/html/webcli/zoomify/ cp -R /path/to/Assets /var/www/html/webcli/zoomify/
-
Restart httpd
sudo service httpd restart
MIM is made available as open source under the Apache License, Version 2.0. Please see the LICENSE file for more information.