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adaptive-control

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summary

a pandemic tracking toolkit that:

  1. runs a Bayesian update process to obtain a real time estimate of Rt

  2. builds a graph of interactions between geographic units accounting for migratory (re-)introductions

  3. at each t from ti to tf:

    • runs the standard SIRD forward epidemiological model

    • simulates a migration out of each state to all other states (used as introductions at time t+1)

  4. (optionally) projects SIRD curves under various policy scenarios and epidemiological parameters

organization

  • adaptive - core package with model and estimator classes
  • studies - specific applications to geographies for which we have data

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networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools

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  • Python 99.3%
  • R 0.7%