This Python project investigates the effect population structure has on organisms with smooth or rugged adaptive landscapes. Various sequence to fitness mappings will be explored including:

• RNA secondary structure
• Simple Integer Model
• Bitstrings
• Kauffman's N-K Model

• Jared Carlson-Stevermer
• Joshua Nahum

* Joseph Henry Rochlin Marcus .. _Jared Carlson-Stevermer : jmcs@utexas.edu .. _Joseph Henry Rochlin Marcus : josephhmarcus@gmail.com .. _Joshua Nahum : josh@nahum.us

• git://github.com/jaredc-s/structure_and_landscapes.git
• git://github.com/jhmarcus/structure_and_landscapes.git
• git://github.com/nahumj/structure_and_landscapes.git

• Python 2.7

• Ned Batchelder's coverage.py
• Nose
• Pep8
• Numpy
• Matplotlib

1)github: https://github.com/jhmarcus/structure-and-landscapes 2)downloads https://github.com/jhmarcus/structure-and-landscapes/downloads 3)download as zip using the defult archive manager 4)sudo apt-get install python2.7-dev - version python2.7-dev (2.7.3-0ubuntu3) 5)sudo apt-get install build-essential - version build-essential (11.5ubuntu2) 6)sudo apt-get install pep8 7) pep8 's version (0.6.1-2ubuntu2) 8) sudo apt-get install python-pip 9) pip version (1.0-1build1)

http://www.vrplumber.com/programming/runsnakerun/

depedencies for runsnakerun apt-get install python-profiler python-wxgtk2.8 python-setuptools

http://www.tbi.univie.ac.at/~ivo/RNA/ http://www.tbi.univie.ac.at/~ronny/RNA/vrna2_source.html

follow instructions on install ./configure make sudo make install

version 2.0.7 download source code and use the default archive manager!

Add this line to ~/.bashrc:

export PYTHONPATH=$PYTHONPATH:$PATH_TO_DIRECTORY_CONTAINING_structure_and_landscape