GitHub - jjoonathan/shakhnovich-evol: Semi-private (not of public interest) repository for scripts

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
HOA_hist_data		HOA_hist_data
PROTEIN		PROTEIN
SNAP_ASCII		SNAP_ASCII
analysis-0.8.3		analysis-0.8.3
dat_nuccore		dat_nuccore
dat_rsd		dat_rsd
libsequence-1.7.4		libsequence-1.7.4
.gitignore		.gitignore
ALIGNED_RB.fasta		ALIGNED_RB.fasta
ASAs.tsv		ASAs.tsv
README		README
Report.tex		Report.tex
autowrap.py		autowrap.py
compute_alphas.py		compute_alphas.py
eugene_seqs.faa		eugene_seqs.faa
extract_aa_from_pdbs.py		extract_aa_from_pdbs.py
extract_asa_from_pdb.py		extract_asa_from_pdb.py
extract_asa_normalization.py		extract_asa_normalization.py
extract_rsd.py		extract_rsd.py
groEL_categorization.tsv		groEL_categorization.tsv
growth_rates.csv		growth_rates.csv
jon-dhfr.faa		jon-dhfr.faa
pdb_seqs.faa		pdb_seqs.faa
pdb_seqs_aln.faa		pdb_seqs_aln.faa
plot_alphas.r		plot_alphas.r
plot_asa.py		plot_asa.py
plot_asa_hist.py		plot_asa_hist.py
plot_groEL_cat.py		plot_groEL_cat.py
plot_mm.py		plot_mm.py
plot_residues_asa.py		plot_residues_asa.py
plot_residues_s.py		plot_residues_s.py
plot_transitions.py		plot_transitions.py
plot_transitions_normed.py		plot_transitions_normed.py
plot_window_an.py		plot_window_an.py
seqtools.py		seqtools.py
shared.py		shared.py
shimon-dhfr.faa		shimon-dhfr.faa
test_figsize.py		test_figsize.py
test_linewidth.py		test_linewidth.py
verify_eugene_seqs.py		verify_eugene_seqs.py

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Just run make to generate figures and misc. output files.

Semi-private (not of public interest) repository for scripts

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