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Pyannote_Emb_Exp2.py
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Pyannote_Emb_Exp2.py
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import torch
import torchaudio
from pyannote.core import Segment
import numpy as np
import torch.utils.data as data
import seaborn as sns
import pandas as pd
import numpy as np
from New_Prepare_Track import Prepare_Track_Multi_Label
from sklearn.decomposition import PCA
from sklearn.preprocessing import StandardScaler, Normalizer
import matplotlib.pyplot as plt
from scipy.spatial.distance import cdist
sns.set_style("darkgrid")
from math import floor
import hydra
from omegaconf import DictConfig
from sklearn.metrics import precision_score, recall_score, roc_auc_score
from pyannote.database.util import load_rttm
import glob
from pyannote.core import Annotation, Timeline
from random import randint
from pyannote.metrics.diarization import DiarizationErrorRate
import csv
def get_embeddings(model, starts, stops, duration, cfg):
excerpt = Segment(start=starts, end=stops)
embedding = model.crop({'audio':cfg.audio.verification_path, 'duration':duration}, segment=excerpt)
#print(np.mean(embedding, axis=0, keepdim=True).shape())
return np.mean(embedding, axis=0, keepdims=True)
def get_track_embeddings(model, frame_list, path, duration):
embeddings = []
for i in range(len(frame_list)):
start, stop = round(frame_list[i][0],1), round(frame_list[i][1],1)
try:
excerpt = Segment(start=start, end=stop)
embedding = np.mean(model.crop({'audio': path, 'duration': duration}, segment=excerpt), axis=0, keepdims=True)
embeddings.append(embedding)
except:
embeddings.append(np.zeros(shape=(1,512), dtype=float))
print('could not embed ',start, stop)
return np.concatenate(embeddings, axis=0)
def speaker_verification(track_embedding, df_labels, df_embeddings_verification, threshold):
speaker_list = df_labels.columns.tolist()
df_output = pd.DataFrame()
for speaker in speaker_list:
speaker_emb = np.array(df_embeddings_verification[speaker].values).reshape(1,512)
output_frames = np.zeros_like(df_labels[speaker].values)
for i in range(len(df_labels[speaker].values)):
distance = cdist(track_embedding[i].reshape(1, -1),speaker_emb,metric='cosine')[0][0]
if distance < threshold:
output_frames[i] = 1
df_output[speaker] = output_frames
return df_output
def multi_speaker_verification(track_embedding, df_labels, df_embeddings_verification, threshold):
speaker_list = df_labels.columns.tolist()
df_output = pd.DataFrame()
speaker_emb = {}
for speaker in speaker_list:
output_frames = np.zeros_like(df_labels[speaker].values)
df_output[speaker] = output_frames
speaker_emb[speaker] = np.array(df_embeddings_verification[speaker].values).reshape(1,512)
for i in range(len(output_frames)):
distances = []
for speaker in speaker_list:
distances.append(cdist(track_embedding[i].reshape(1, -1),speaker_emb[speaker],metric='cosine')[0][0])
if min(distances) <= threshold:
print('MINIMUM IS')
print(distances.index(min(distances)))
print('---------------')
# Upload
df_output.iloc[i, speaker[distances.index(min(distances))]] = 1
return df_output
def FAR_FRR(y_true, y_pred):
false_acceptance = 0
false_rejection = 0
for i in range(len(y_true)):
if (y_true[i] == 1) and (y_pred[i] == 0):
false_rejection = false_rejection + 1
elif (y_true[i] == 0) and (y_pred[i] == 1):
false_acceptance = false_acceptance + 1
FAR = false_acceptance/len(y_true[y_true == 0])
FRR = false_rejection/len(y_true[y_true == 1])
return FAR, FRR
def plot_PR_ROC_per_spk(x, y, title, x_label, y_label):
speaker_list = y.columns.tolist()
plt.figure()
plt.xlabel(x_label)
plt.ylabel(y_label)
for speaker in speaker_list:
try:
plt.plot(x[speaker], y[speaker])
except:
plt.plot(x, y[speaker])
plt.legend(speaker_list)
plt.savefig(title+'.png')
def plot_FRR_FAR_per_spk(FAR, FRR, threshold, title):
speaker_list = FAR.columns.tolist()
colors = []
for i in range(len(speaker_list)):
colors.append('#%06X' % randint(0, 0xFFFFFF))
plt.figure()
plt.xlabel('Threshold')
plt.ylabel('FAR (Left), FRR(Right) (%)')
for i, speaker in enumerate(speaker_list):
plt.plot(threshold, FAR[speaker], color=colors[i])
plt.plot(threshold, FRR[speaker], color=colors[i])
plt.legend(speaker_list)
plt.savefig(title+'.png')
def fDER(df_labels, df_outputs):
speaker_list = df_labels.columns.tolist()
num_frames = len(df_labels.iloc[0, :])
E_FA = 0
E_MISS = 0
E_Spk = 0
for i in range(num_frames):
true_frame = df_labels.iloc[i, :].to_numpy()
output_frame = df_outputs.iloc[i,:].to_numpy()
if 1 not in true_frame:
if 1 in output_frame:
E_FA = E_FA + 1
else:
if 1 not in output_frame:
E_MISS = E_MISS + 1
elif true_frame != output_frame:
E_Spk = E_Spk + 1
print(E_FA/num_frames)
print(E_MISS/num_frames)
print(E_Spk/num_frames)
DER = (E_FA + E_MISS + E_Spk)/num_frames
return DER
def save_plot(x, y, x_label, y_label, title):
plt.figure()
plt.plot(x, y)
plt.xlabel(x_label)
plt.ylabel(y_label)
plt.savefig(title+'.png')
def performance_metrics(df_labels,df_embeddings_verification, track_embedding, cfg, frame_list, iteration):
speaker_list = df_labels.columns.tolist()
df_precision = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_roc = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_recall = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_far = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
df_frr = pd.DataFrame(columns=speaker_list, index=cfg.audio.threshold)
der = []
metric = DiarizationErrorRate(skip_overlap=True, collar=cfg.audio.collar)
groundtruth = load_rttm(cfg.audio.rttm_path)[cfg.audio.uri[iteration]]
for threshold in cfg.audio.threshold:
df_output = multi_speaker_verification(track_embedding=track_embedding, df_labels=df_labels, df_embeddings_verification=df_embeddings_verification, threshold=threshold)
for speaker in speaker_list:
try:
df_precision.loc[threshold, speaker] = precision_score(df_labels[speaker], df_output[speaker], average='binary')
except:
df_precision.loc[threshold, speaker] = 0
try:
df_recall.loc[threshold, speaker] = recall_score(df_labels[speaker], df_output[speaker], average='binary')
except:
df_recall.loc[threshold, speaker] = 0
try:
df_roc.loc[threshold, speaker] = roc_auc_score(df_labels[speaker], df_output[speaker], average=None)
except:
df_roc.loc[threshold, speaker] = 0
try:
far, frr = FAR_FRR(y_true=df_labels[speaker], y_pred=df_output[speaker])
df_far.loc[threshold, speaker] = far
df_frr.loc[threshold, speaker] = frr
except:
df_far.loc[threshold, speaker] = 0
df_frr.loc[threshold, speaker] = 0
components = metric(groundtruth, merge_frames(df_outputs=df_output, frame_list=frame_list,
filename=cfg.audio.uri[iteration] + '_' + str(threshold)),
detailed=True)
components = metric[:]
der.append(components)
return df_precision, df_recall, df_roc, df_far, df_frr, der
def DER(df_labels, df_outputs, frame_list, cfg, collar):
speaker_list = df_labels.columns.tolist()
rttm_segment = load_rttm(cfg.audio.rttm_path)[cfg.audio.uri[0]]
E_MISS = 0
E_FA = 0
E_Spk = 0
reference_length = 0
length = (len(frame_list))
for i, frame in enumerate(frame_list):
frame_start, frame_end = float(frame[0]), float(frame[1])
segments = []
for segment in rttm_segment.get_timeline():
if list(rttm_segment.get_labels(segment))[0] in speaker_list:
intersection = max(0, min(float(frame[1]), segment.end) - max(float(frame[0]), segment.start))
if intersection > collar:
segments.append(segment)
#print('start', segment.start)
#print('end', segment.end)
reference_length = reference_length + intersection
if len(segments) == 0:
if 1 in df_outputs.iloc[i,:].to_numpy():
E_FA = E_FA + (float(frame[1]) - float(frame[0]))
if len(segments) > 0:
if 1 not in (df_outputs.iloc[i, :].to_numpy()):
E_MISS = E_MISS + (float(frame[1]) - float(frame[0]))
else:
active_speakers = []
for interval in segments:
intersection = max(0, min(float(frame[1]), interval.end) - max(float(frame[0]), interval.start))
active_speakers.append(list(rttm_segment.get_labels(interval))[0])
for active_spk in active_speakers:
if (df_outputs.loc[i, active_spk] == 0):
E_Spk = E_Spk + (segments[active_speakers.index(active_spk)].end - segments[active_speakers.index(active_spk)].start)
inactive_speakers = list(set(speaker_list)-set(active_speakers))
for spk in inactive_speakers:
if (df_outputs.loc[i, spk] == 1):
E_Spk = E_Spk + (float(frame[1])-float(frame[0]))
print(reference_length)
print(E_MISS)
print(E_FA)
print(E_Spk)
return (E_MISS + E_Spk + E_FA)/reference_length
#WIDI!!
def merge_frames(df_outputs, frame_list, filename):
speaker_list = df_outputs.columns.tolist()
annotation = Annotation()
for speaker in speaker_list:
seg_start = 0
seg_end = 0
for i, label in enumerate(df_outputs[speaker]):
if (label == 1) and (seg_start == 0):
seg_start = float(frame_list[i][0])
elif (label == 0) and (seg_start > 0):
seg_end = float(frame_list[i][1])
annotation[Segment(start=seg_start, end=seg_end)] = speaker
seg_start = 0
else:
seg_end = float(frame_list[i][1])
#with open('/home/lucas/PycharmProjects/MetricEmbeddingNet/rttm_out/'+filename+'.rttm', 'w') as f:
# annotation.write_rttm(f)
return annotation
@hydra.main(config_path="Pyannote_Emb_Config_2.yaml")
def main(cfg: DictConfig) -> None:
print(cfg.pretty())
model = torch.hub.load(cfg.pretrained_model.path, cfg.pretrained_model.type)
excerpt = Segment(start=60.0, end=120.0)
speakers = []
for k, path in enumerate(cfg.audio.verification_path):
print(k)
print(path)
list = glob.glob(cfg.audio.target_path[k]+'/*', recursive=True)
print(cfg.audio.target_path[k])
for i in range(len(list)):
list[i] = list[i][list[i].rfind('/')+1:list[i].rfind('.')]
speakers.append(tuple(list))
print(speakers)
for window_length in cfg.audio.window_length:
for step_length in cfg.audio.step_length:
df_DER = pd.DataFrame()
for i, track in enumerate(cfg.audio.verification_path):
df_frames = pd.DataFrame()
df_embedding_track = pd.DataFrame()
df_embeddings_verification = pd.DataFrame()
frame_list, df_frames= Prepare_Track_Multi_Label(Audio_path=track, RTTM_path=cfg.audio.rttm_path,
window_size=window_length,
step_size=float(window_length * step_length))
for j in range(len(speakers[i])):
label = speakers[i][j]
target_embedding = np.mean(model.crop({'audio':cfg.audio.target_path[i]+'/'+label+'.wav','duration':1000},segment=excerpt), axis=0, keepdims=True)[0]
df_embeddings_verification[label] = target_embedding
duration = int(frame_list[-1][1])
track_embedding = get_track_embeddings(model=model, frame_list=frame_list, path=track, duration=duration)
df_precision, df_recall, df_roc, df_far, df_frr, der = performance_metrics(df_labels=df_frames, df_embeddings_verification=df_embeddings_verification, cfg=cfg, track_embedding=track_embedding, frame_list=frame_list, iteration=i)
#Plot and save precision-recall data
plot_PR_ROC_per_spk(x=df_recall, y=df_precision, title='Precision-Recall Curve (Per-Speaker) ('+cfg.audio.uri[i]+')'+'WL:'+str(window_length)+'SL'+str(step_length), x_label='Recall', y_label='Precision')
# Plot and save FRR-FAR data
plot_PR_ROC_per_spk(x=cfg.audio.threshold, y=df_roc, title='AUC-ROC (per-speaker) ('+cfg.audio.uri[i]+')WL:'+str(window_length)+'SL'+str(step_length), x_label='threshold', y_label='AUC')
plot_FRR_FAR_per_spk(FAR=df_far, FRR=df_frr,threshold=cfg.audio.threshold, title='FRR-FAR (per-speaker) ('+cfg.audio.uri[i]+')WL:' +str(window_length)+'SL'+str(step_length))
with open(cfg.dataframes.save_path+'/PR_AUC_Single.csv', mode='a') as csv_file:
fieldnames = ['Window Length', 'Overlap', 'Track', 'Threshold', 'Speaker', 'Precision', 'Recall', 'AUC', 'FAR','FRR']
writer = csv.DictWriter(csv_file, fieldnames=fieldnames)
writer.writeheader()
for t, threshold in enumerate(cfg.audio.threshold):
speaker_list = df_frames.columns.tolist()
for speaker in speaker_list:
writer.writerow({'Window Length': window_length,
'Overlap': step_length,
'Track': cfg.audio.uri[i],
'Threshold':threshold,
'Speaker': speaker,
'Precision': df_precision.loc[threshold, speaker],
'Recall': df_recall.loc[threshold, speaker],
'AUC': df_roc.loc[threshold, speaker],
'FAR': df_far.loc[threshold, speaker],
'FRR':df_frr.loc[threshold, speaker]})
der_error_rate = []
der_fa = []
der_conf = []
der_md = []
der_tot = []
for metrics in der:
print(metrics)
error_rate = (metrics['false alarm'] + metrics['missed detection'] + metrics['confusion']) / \
metrics['total']
if error_rate < 1.0:
der_error_rate.append(error_rate)
else:
der_error_rate.append(1.0)
der_fa.append(metrics['false alarm'])
der_conf.append(metrics['confusion'])
der_md.append(metrics['missed detection'])
der_tot.append(metrics['total'])
plt.figure()
plt.plot(cfg.audio.threshold, der_error_rate)
plt.title(
'Diarization Error Rate vs. Threshold (' + cfg.audio.uri[i] + ')' + str(window_length) + 'SL' + str(
step_length))
plt.xlabel('Threshold')
plt.ylabel('DER')
plt.savefig('DER_' + cfg.audio.uri[i] + '_WL:' + str(window_length) + 'SL' + str(step_length) + '.png')
with open(cfg.dataframes.save_path + '/DER_Single.csv', mode='a') as csv_file:
fieldnames = ['Window Length', 'Overlap', 'Track', 'Threshold', 'DER', 'False Alarm',
'Missed Detection', 'Confusion', 'Total']
writer = csv.DictWriter(csv_file, fieldnames=fieldnames)
writer.writeheader()
for t, threshold in enumerate(cfg.audio.threshold):
writer.writerow({'Window Length': window_length,
'Overlap': step_length,
'Track': cfg.audio.uri[i],
'Threshold': threshold,
'DER': der_error_rate[t],
'False Alarm': der_fa[t],
'Missed Detection': der_md[t],
'Confusion': der_conf[t],
'Total': der_tot[t]})
if __name__ == '__main__':
main()