# Visualizer web page: http://mitra.stanford.edu/kundaje/leepc12/visualizer
Usage:
1) Fill in 'Root directory' and 'Root URL' fields in the top of the web page.
example: /srv/www/kundaje/leepc12, http://mitra.stanford.edu/kundaje/leepc12
2) Click 'Load genome data files' button.
3) Choose genome data to visualize (select items and double-click, press 'a' or click 'Move down').
4) Click 'Prepare'.
5) Modify detailed information about tracks (type, names, color, ...).
6) Specify ref. genome (eg. hg19) in the bottom text box.
7) Click 'Visualize'.
# Resursive data type converter (including sorting and indexing bam and bed type files)
Usage:
/srv/www/kundaje/leepc12/visualizer/converter/recursive_gen_idx.sh [TARGET DIRECTORY]
Find and organize genome data files and visualize them with WashU Epigenome Browser
License
kundajelab/visualizer
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Find and organize genome data files and visualize them with WashU Epigenome Browser
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