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Atlas-based processing pipeline for structural and functional MRI data

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AIDAmri

Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain

=> MANUAL

ARA CREATOR

Matlab script to generate a custom version of the Allen Mouse Brain Atlas.

EXAMPLE FILES

Mouse MRI data, acquired with Bruker 9.4T - cryo coil setup: adult C57BL7/6 mouse, T2-weighted (anatomical scan), DTI (structural connectivty scan), rs-fMRI (functional connectivity scan).

CONTACT

Niklas Pallast and Markus Aswendt (contact: markus.aswendt@uk-koeln.de)alt text

Need help? Chat with us and find answers to FAQs in the AIDA_Tools Gitter rooms: Gitter


LICENSE GNU General Public License v3.0

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Atlas-based processing pipeline for structural and functional MRI data

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  • Python 93.2%
  • MATLAB 6.8%