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analyze.py
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analyze.py
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import sys
import state
import fitnessFunction
import analysis
import pylab
import matplotlib.pyplot as plt
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('program', metavar='path/to/programName', help='name of the program to evaluate')
parser.add_argument('runs', default=30, help='number of runs to perform', type=int)
parser.add_argument('size', default=300, help='number of nodes in generated graphs', type=int)
parser.add_argument('evaluator', default='minMetis', help='name of fitness evaluation method')
args = parser.parse_args()
if args.program.find('/') != -1:
sys.path.append(args.program[:args.program.rfind('/')+1])
plug = __import__(args.program[args.program.rfind('/')+1:])
x = range(args.size)
trend_aveDegree = [0 for i in xrange(args.size)]
trend_edges = [0 for i in xrange(args.size)]
trend_edgecut = [0 for i in xrange(args.size)]
trend_connectivity = [0 for i in xrange(args.size)]
trend_resilNode = [0 for i in xrange(args.size)]
trend_resilEdge = [0 for i in xrange(args.size)]
trend_fitness = [0.0 for i in xrange(args.size)]
degreeData= []
aveEdgeCut = 0.0
edges = 0.0
fitness = 0.0
s = None
for i in xrange(args.runs):
s = state.state()
for j in xrange(args.size):
add = plug.selectNodes(s)
s.addNode(add)
if not j:
continue
trend_aveDegree[j]+=sum(s.calcDegree())/float(j)
trend_edges[j]+=analysis.edges(s)
trend_edgecut[j]+=analysis.eccentricity(s)
trend_connectivity[j]+=analysis.connected(s)
trend_resilNode[j] += analysis.resilNode(s)
trend_resilEdge[j] += analysis.resilEdge(s)
val = fitnessFunction.funcs[args.evaluator](s)*trend_connectivity[j]
if val >-1000000:
trend_fitness[j]+=val
fitness+=fitnessFunction.funcs[args.evaluator](s)
degreeData .extend(s.calcDegree())
aveEdgeCut+=analysis.edgeCut(s)
numEdges = analysis.edges(s)
edges+=numEdges
edges/=args.runs
fitness/=args.runs
aveEdgeCut/=args.runs
aveDegree = sum(degreeData)/float(len(degreeData))
ave = lambda y: y/float(args.runs)
trend_aveDegree = map(ave,trend_aveDegree)
trend_edges = map(ave,trend_edges)
trend_edgecut = map(ave,trend_edgecut)
trend_connectivity = map(ave,trend_connectivity)
trend_fitness = map(ave,trend_fitness)
trend_resilNode = map(ave, trend_resilNode)
trend_resilEdge = map(ave, trend_resilEdge)
ad = open(sys.argv[1][:-4]+"aveDeg.dat",'w')
ed = open(sys.argv[1][:-4]+"edge.dat",'w')
ec = open(sys.argv[1][:-4]+"edgecut.dat",'w')
con = open(sys.argv[1][:-4]+"connect.dat",'w')
fit = open(sys.argv[1][:-4]+"fitness.dat",'w')
rnode = open(sys.argv[1][:-4]+"resilnode.dat",'w')
redge = open(sys.argv[1][:-4]+"resiledge.dat",'w')
for i in xrange(args.size):
ad.write(str(i)+","+str(trend_aveDegree[i])+"\n")
ed.write(str(i)+","+str(trend_edges[i])+"\n")
ec.write(str(i)+","+str(trend_edgecut[i])+"\n")
con.write(str(i)+","+str(trend_connectivity[i])+"\n")
fit.write(str(i)+","+str(trend_fitness[i])+"\n")
rnode.write(str(i)+","+str(trend_resilNode[i])+"\n")
redge.write(str(i)+","+str(trend_resilEdge[i])+"\n")
ad.close()
ed.close()
ec.close()
con.close()
fit.close()
print
print "Evolved Program"
print "Nodes: ",args.size
print "Fitness: ",fitness
print "EdgeCut: ",aveEdgeCut
print "Edges: ", edges
print "Ave Degree: ",aveDegree
print
fig = plt.figure(1)
fig.subplots_adjust(hspace=.5)
ax1 = plt.subplot(331)
plt.plot(x,trend_aveDegree,'k')
ax1.set_title('Average Degree')
ax2 = plt.subplot(332)
plt.plot(x,trend_edges,'k')
ax2.set_title('Edges')
ax3 = plt.subplot(333)
plt.plot(x,trend_edgecut,'k')
ax3.set_title('Eccentricity')
ax4 = plt.subplot(334)
plt.plot(x,trend_connectivity,'k')
ax4.set_title('Connectivity Probability')
ax6 = plt.subplot(335)
plt.plot(x, trend_resilNode, 'k')
ax6.set_title('Node Resilience')
ax7 = plt.subplot(336)
plt.plot(x, trend_resilEdge, 'k')
ax7.set_title('Edge Resilience')
ax4 = plt.subplot(337)
plt.plot(x,trend_fitness,'k')
ax4.set_title('Fitness')
ax5 = plt.subplot(338)
n,bins,patches = plt.hist(degreeData,1+max(degreeData)-min(degreeData),histtype='stepfilled')
plt.setp(patches,'facecolor','g','alpha',0.75)
plt.ylim([0,max(n)])
ax5.set_title('Degree Distribution')
plt.savefig(sys.argv[1]+"analysis.png")
plt.show()