pynrm

A python non-redundant masking and AO imaging pipeline based on the POISE algorithm.

The code can be run in two ways - either from a python prompt, or as a series of scripts. The key scripts are:

run_csv: Create the comma separated value file.

run_calibration: Makes darks and flats

run_make_ftpix: From a high SNR observation, tweaks the Fourier sampling for a particular mask (including full pupil).

run_clean: Clean the data and chop out a subarray containing our object of interest.

run_XXX: Missing scripts to do Kernel-phase or other aperture masking analysis.

TODO:

Figure out how to modify the nirc2 files natively from python in order to have fits compliant files. Currently, you need to download the fits files form the Keck archive or read and write from IDL
Document "go.pro" including rdir: REDUCTION DIRECTORY (with flats and darks etc.) cdir: CUBE DIRECTORY (contains cleaned data cubes) ddir: RAW DATA DIRECTORY

Name		Name	Last commit message	Last commit date
Latest commit History 71 Commits
data		data
doc		doc
pynrm		pynrm
utils		utils
.gitignore		.gitignore
CSVsort.py		CSVsort.py
LICENSE		LICENSE
README.md		README.md
analysis_script.py		analysis_script.py
analysis_script_dither.py		analysis_script_dither.py
azimuthalAverage.py		azimuthalAverage.py
best_psf_binary		best_psf_binary
best_psf_subtract		best_psf_subtract
calibration.py		calibration.py
change_cal_nums.py		change_cal_nums.py
choose_psfs.py		choose_psfs.py
contratio.py		contratio.py
crat_all_images.py		crat_all_images.py
crat_from_object.py		crat_from_object.py
fake_companion.py		fake_companion.py
go.py		go.py
interpolate_all_images.py		interpolate_all_images.py
lin_comb.py		lin_comb.py
marginalise_image.py		marginalise_image.py
nirc2.py~		nirc2.py~
nirc2_darks		nirc2_darks
pbclass.py		pbclass.py
popCSV.py		popCSV.py
psf_marginalise.py		psf_marginalise.py
rl_deconv.py		rl_deconv.py
rl_from_object.py		rl_from_object.py
rlmodule.py		rlmodule.py
run_calibration		run_calibration
run_clean		run_clean
run_csv		run_csv
run_csv_rhea		run_csv_rhea
run_make_ftpix		run_make_ftpix
stats.py		stats.py
tools.py		tools.py

mikeireland/pynrm