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This Github repository is intended to complement the publication: Loman NJ, et al. Performance comparison of bench-top sequencing instruments. Nature Biotechnology. 2012 (In Press) At the moment it contains the scripts used to produce tables and figures in the paper, as well as the variety of assemblies produced. Guide to directories: analysis/ - Scripts to generate figures and tables. annotations/ - E. coli strain 280 reference annotation (Gbk format) assemblies/ - Draft assemblies from benchtop data scripts/ - Repository of scripts used for analysis. My intention is to update this repository and make it easy to reproduce the full range of analysis done for this article, and for others to use the scripts for their own analysis. Please use the Github "watch" facility if you wish to track these updates. Currently due to Github space limitations, the sequence files are available via the SRA. I plan to write a Makefile which can extract them automatically into the workspace. -- Nick Loman, 22nd April 2012 (n.j.loman@bham.ac.uk)
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