Add this to your ~/.profile to get access to the cmo_* and cmoflow_* tools:
# Set PATH to include MSKCC's bin of tools, if found
if [ -d "/opt/common/CentOS_6-dev/bin/current" ]; then
PATH="/opt/common/CentOS_6-dev/bin/current:$PATH"
fi
# Set PATH to include MSKCC's bin of python tools, if found
if [ -d "/opt/common/CentOS_6-dev/python/python-2.7.10/bin" ]; then
PATH="/opt/common/CentOS_6-dev/python/python-2.7.10/bin:$PATH"
fiDocumentation lives here, and running workflows can be tracked here.
Here is how to install these tools without sudo rights:
curl -LO https://github.com/mskcc/cmo/archive/master.zip
unzip master.zip
cd cmo-master
python setup.py install --userAdd this to your ~/.profile to get access to the cmo_* and cmoflow_* tools:
# Set PATH to include local python bin if found
if [ -d "$HOME/.local/bin" ]; then
PATH="$HOME/.local/bin:$PATH"
fi