GitHub - notgitter/sepp: Sate-Enabled Phylogenetic Placement (SEPP)

Summary

This repository includes code for SEPP.

Each of these related tools have their own README files README.SEPP.md.

SEPP stands for "SATe-enabled phylogenetic placement", and addresses the problem of phylogenetic placement of short reads into reference alignment and trees.

Bugs and Errors

SEPP is under active research development at UTCS by the Warnow Lab (and especially with her PhD students Siavash Mirarab and Nam Nguyen). Please report any errors to Siavash Mirarab (smirarab@gmail.com) and Nam Nguyen (namphuon@cs.utexas.edu).

Name		Name	Last commit message	Last commit date
Latest commit History 218 Commits
sepp		sepp
test/unittest		test/unittest
tools		tools
tutorial		tutorial
.gitignore		.gitignore
.project		.project
CHANGELOG		CHANGELOG
README		README
README.SEPP.md		README.SEPP.md
README.TIPP.md		README.TIPP.md
README.md		README.md
default.main.config		default.main.config
distribute_setup.py		distribute_setup.py
merge_script.py		merge_script.py
run_abundance.py		run_abundance.py
run_sepp.py		run_sepp.py
run_tipp.py		run_tipp.py
setup.py		setup.py
split_sequences.py		split_sequences.py

notgitter/sepp

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