This project aims to clean, filter, compress and standardize Single Cell Transcriptomics data. The main pipeline of this project is shown in the figure below.

These instructions will get you a copy of the project up and running on your machine.

Python 3 needs to be installed on the computer. Python can be downloaded and installed from here.

Download or clone this project. Open terminal in the folder and run the following command to install the required packages.

pip install -r requirements.txt

To run the main pipeline, run the main.py file in your terminal as shown below.

python main.py

• Razin Shaikh - RazinShaikh

• Minjie Lyu - SkullCandy47

• Vladimir Brusic