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automated assembly evaluation based on Arredono-Alonso et al., 2017

usuage

  1. put your fasta files to data/fasta/
  2. add the name of files you want to be compared to file_list.txt
  3. run docker and inspect data/cbar_report_$file.txt
sudo docker build -t plasmid_evaluation .
sudo docker run -v /absolute/path/to/data/folder:/home/data -t plasmid_evaluation

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Dockerized automated assembly testing for plasmids

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