This is a repository for exploratory code and results pertaining to
machine learning for detection of higher-order features (e.g. DNA
looping, TF polymerization) in ChIP-seq datasets. We wish to
discover the “secrets” contained in ChIP-seq data, hence
chipsecret.
Some data used in this study is currently unpublished. Please contact patrick[dot]oneill@umbc.edu for details.
We assume you have installed:
- bowtie
- standard POSIX environment, e.g. Python 2.x, curl, make, &c.
Then type:
$ make