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MIND pipeline paper

This repository contains the paper for the MIND pipeline

The MiCoNE framework is introduced in:

Kishore, D., Birzu, G., Hu, Z., DeLisi, C., Korolev, K., & Segrè, D. (2023). Inferring microbial co-occurrence networks from AMPLICON DATA: A systematic evaluation. mSystems. doi:10.1128/msystems.00961-22.

Data related to the publication can be found on Zenodo: https://doi.org/10.5281/zenodo.7051556.

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