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generate.py
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generate.py
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#coding: utf-8
import csv
import ast
import os
import numpy as np
import random, copy
import cPickle as pickle
from math import sqrt
from sklearn.metrics import mean_squared_error as MSE
from pybrain.datasets.supervised import SupervisedDataSet as SDS
from pybrain.tools.shortcuts import buildNetwork
from pybrain.supervised.trainers import BackpropTrainer
from pybrain.tools.shortcuts import buildNetwork
#from pybrain.tools.customxml import NetworkWriter
#from pybrain.tools.customxml import NetworkReader
from pybrain.tools.xml.networkwriter import NetworkWriter
from pybrain.tools.xml.networkreader import NetworkReader
from pybrain.datasets import ClassificationDataSet
from pybrain.utilities import percentError
from pybrain.tools.shortcuts import buildNetwork
from pybrain.supervised.trainers import BackpropTrainer
from pybrain.structure.modules import SoftmaxLayer
from pylab import ion, ioff, figure, draw, contourf, clf, show, hold, plot
from scipy import diag, arange, meshgrid, where
from numpy.random import multivariate_normal
class Generate:
def __init__(self,_x,_y):
print("funcao Generacao .............. ")
#print("ID,Adoption,Died,Euthanasia,Return_to_owner,Transfer")
def random(self,lines):
print("Criando dados aletatorios .... ")
i=1
output = open('animal_output_RANDOM.csv', 'wb')
output.write("ID,Adoption,Died,Euthanasia,Return_to_owner,Transfer\n")
for line in xrange(lines):
output.write( "{},{},{},{},{},{}\n".format(i,random.uniform(0,1),random.uniform(0,1),random.uniform(0,1),random.uniform(0,1),random.uniform(0,1),) )
i=i+1
print("Concluido. Verifique o arquivo animal_output_RANDOM.csv")
"""
def train(self,train_file):
#treino de regressao ML
#arquivo onde serao gravados os dados de treino
output_model_file = 'model.pkl'
## ???
hidden_size = 100 ## precisaremos mudar?
##quantidade de epocas
epochs = 6
# carrega o arquivo de treino
train = np.loadtxt( train_file, delimiter = ',' )
#separa em pares
x_train = train[:,0:-1] #par = (tudo , tudo-ultimo)
y_train = train[:,-1] #par = (tudo , ultimo)
#transpoe linhas em colunas
y_train = y_train.reshape( -1, 1 )
#calcula o tamanho do arrays
input_size = x_train.shape[1]
target_size = y_train.shape[1]
# prepara o dataset
ds = SDS( input_size, target_size ) #cria o data set com o tamanho da matriz lida
ds.setField( 'input', x_train ) #seta o tamanho dos campos
ds.setField( 'target', y_train ) #seta o tamanho dos campos
#inicia o treino
net = buildNetwork( input_size, hidden_size, target_size, bias = True )
trainer = BackpropTrainer( net, ds )
print ("training for {} epochs...".format( epochs ))
for i in range( epochs ):
mse = trainer.train()
rmse = sqrt( mse )
print ( "training RMSE, epoch {}: {}".format( i + 1, rmse ) )
#gera arquivo de saida
pickle.dump( net, open( output_model_file, 'wb' ))
"""
"""
def predict(self,test_file):
model_file = 'model.pkl'
output_predictions_file = 'saida_predictions.txt'
# load model
net = pickle.load( open( model_file, 'rb' ))
# load data
test = np.loadtxt( test_file, delimiter = ',' )
x_test = test[:,0:-1]
y_test = test[:,-1]
y_test = y_test.reshape( -1, 1 )
# you'll need labels. In case you don't have them...
y_test_dummy = np.zeros( y_test.shape )
input_size = x_test.shape[1]
target_size = y_test.shape[1]
assert( net.indim == input_size )
assert( net.outdim == target_size )
# prepare dataset
ds = SDS( input_size, target_size )
ds.setField( 'input', x_test )
ds.setField( 'target', y_test_dummy )
# predict
p = net.activateOnDataset( ds )
mse = MSE( y_test, p )
rmse = sqrt( mse )
print "testing RMSE:", rmse
np.savetxt( output_predictions_file, p, fmt = '%.6f' )
"""
#http://pybrain.org/docs/tutorial/fnn.html
def ReadTrainFile(self,_x,_y):
print("Lendo matriz de treino .......")
#prepara um banco de dados com as proporcoes dos arquivos de entrada _x e _y
TrainData = ClassificationDataSet(len(_x[0]), 1, nb_classes=5)
#insere os exemplos
i=0
for line in _x:
TrainData.addSample(line, _y[i])
i+=1
return TrainData
def ReadTestFile(self,test_file,features):
print("Lendo arquivo de teste ........")
TestData = ClassificationDataSet(features, 1, nb_classes=5)
i=0
test = open(test_file, 'r')
for line in test:
nline = np.fromstring(line, dtype=int, sep=',')
TestData.addSample(nline, -1)
i+=1
test.close()
return TestData
def predict_class(self,_x,_y,test_file,epochs,steps):
print("Iniciando funcao predict_class() .............")
traindata = self.ReadTrainFile(_x,_y)
#testdata = self.ReadTestFile( test_file, len(_x[0]) )
print ("____________________________________________________________________________")
print ("A matrix de treino tem ", len(traindata),"linhas de dados")
print ("Dimensoes de Input e Output : ", traindata.indim, traindata.outdim)
print ("____________________________________________________________________________\n")
print("convertendo arquivos .................")
traindata._convertToOneOfMany( )
#testdata._convertToOneOfMany( )
import os.path
if os.path.exists('rede_animal.xml'):
print(" Carregando a rede de treinos do arquivo rede_animal.xml *************** ")
fnn = NetworkReader.readFrom('rede_animal.xml')
else:
print(" Criando rede de treinos no arquivo rede_animal.xml *************** ")
fnn = buildNetwork( traindata.indim, 5, traindata.outdim, outclass=SoftmaxLayer )
trainer = BackpropTrainer( fnn, dataset=traindata, momentum=0.1, verbose=True, weightdecay=0.01)
print("Treinando .............")
for i in range(epochs):
print("Treinando epoca ", i)
trainer.trainEpochs( steps )
NetworkWriter.writeToFile(fnn, 'rede_animal.xml')
print(" Rede salva em rede_animal.xml (Ok) ")
print("Lendo arquivo de teste e classificando ..........")
print("Gerando resultados em ANIMAL_OUTPUT.CSV ..........")
output = open('animal_output.csv', 'wb')
i=1
output.write("ID,Adoption,Died,Euthanasia,Return_to_owner,Transfer\n")
for line in open(test_file, 'r'):
x = ast.literal_eval(line)
output.write( "{},{},{},{},{},{} \n".format(i,fnn.activate( x )[0],fnn.activate( x )[1],fnn.activate( x )[2],fnn.activate( x )[3],fnn.activate( x )[4]) )
i=i+1
print("Concluido")