CarveMe is a python-based tool for genome-scale metabolic model reconstruction.

For more details please check: http://carveme.readthedocs.io/

Can be easily installed using pip:

pip install carveme

Additionally, you must install diamond and CPLEX (please check the documentation for details).

Developed at the European Molecular Biology Laboratory (2017).

For citation purposes please refer to our paper (pre-print currently available on biorXiv: https://www.biorxiv.org/content/early/2018/01/12/223198).

Released under an Apache License.