def test_get_current_container_error(self):
api = mock.MagicMock()
api.containers().current().execute.side_effect = ApiError(
httplib2.Response({"status": 300}), bytes(b""))
logger = mock.MagicMock()
with self.assertRaises(ApiError):
get_current_container(api, num_retries=0, logger=logger)
def test_get_current_container_404_error(self):
api = mock.MagicMock()
api.containers().current().execute.side_effect = ApiError(
httplib2.Response({"status": 404}), bytes(b""))
logger = mock.MagicMock()
current_container = get_current_container(api,
num_retries=0,
logger=logger)
self.assertEqual(current_container, None)
def test_run(self, list_images_in_arv):
for enable_reuse in (True, False):
runner = mock.MagicMock()
runner.project_uuid = "zzzzz-8i9sb-zzzzzzzzzzzzzzz"
runner.ignore_docker_for_reuse = False
runner.num_retries = 0
document_loader, avsc_names, schema_metadata, metaschema_loader = cwltool.process.get_schema(
"v1.0")
list_images_in_arv.return_value = [["zzzzz-4zz18-zzzzzzzzzzzzzzz"]]
runner.api.collections().get().execute.return_value = {
"portable_data_hash": "99999999999999999999999999999993+99"
}
# Simulate reused job from another project so that we can check is a can_read
# link is added.
runner.api.jobs().create().execute.return_value = {
'state': 'Complete' if enable_reuse else 'Queued',
'owner_uuid': 'zzzzz-tpzed-yyyyyyyyyyyyyyy'
if enable_reuse else 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
'uuid': 'zzzzz-819sb-yyyyyyyyyyyyyyy',
'output': None,
}
tool = cmap({
"inputs": [],
"outputs": [],
"baseCommand": "ls",
"arguments": [{
"valueFrom": "$(runtime.outdir)"
}]
})
make_fs_access = functools.partial(
arvados_cwl.CollectionFsAccess,
collection_cache=arvados_cwl.CollectionCache(
runner.api, None, 0))
arvtool = arvados_cwl.ArvadosCommandTool(
runner,
tool,
work_api="jobs",
avsc_names=avsc_names,
basedir="",
make_fs_access=make_fs_access,
loader=Loader({}))
arvtool.formatgraph = None
for j in arvtool.job({},
mock.MagicMock(),
basedir="",
make_fs_access=make_fs_access):
j.run(enable_reuse=enable_reuse)
runner.api.jobs().create.assert_called_with(
body=JsonDiffMatcher({
'owner_uuid': 'zzzzz-8i9sb-zzzzzzzzzzzzzzz',
'runtime_constraints': {},
'script_parameters': {
'tasks': [{
'task.env': {
'HOME': '$(task.outdir)',
'TMPDIR': '$(task.tmpdir)'
},
'command': ['ls', '$(task.outdir)']
}],
},
'script_version': 'master',
'minimum_script_version':
'a3f2cb186e437bfce0031b024b2157b73ed2717d',
'repository': 'arvados',
'script': 'crunchrunner',
'runtime_constraints': {
'docker_image': 'arvados/jobs',
'min_cores_per_node': 1,
'min_ram_mb_per_node': 1024,
'min_scratch_mb_per_node':
2048 # tmpdirSize + outdirSize
}
}),
find_or_create=enable_reuse,
filters=[['repository', '=', 'arvados'],
['script', '=', 'crunchrunner'],
[
'script_version', 'in git',
'a3f2cb186e437bfce0031b024b2157b73ed2717d'
],
[
'docker_image_locator', 'in docker',
'arvados/jobs'
]])
if enable_reuse:
runner.api.links().create.assert_called_with(
body=JsonDiffMatcher(
{
'link_class': 'permission',
'name': 'can_read',
"tail_uuid": "zzzzz-8i9sb-zzzzzzzzzzzzzzz",
"head_uuid": "zzzzz-819sb-yyyyyyyyyyyyyyy",
}))
# Simulate an API excepction when trying to create a
# sharing link on the job
runner.api.links().create.side_effect = ApiError(
mock.MagicMock(return_value={'status': 403}),
'Permission denied')
j.run(enable_reuse=enable_reuse)
j.output_callback.assert_called_with({}, 'success')
else:
assert not runner.api.links().create.called