def make_continuum(script, parameters, project_dict, continfo, comments, flagchannels=False):
    width = continfo['width']
    widthall = continfo['widthall']
    contspws = "contspws = '" + continfo['cont_index'] + "'\n"
    spwall = continfo['spwall']

    if comments == False:
        script =  script + com.im_template_header() + sc.finalvis() + sc.plotspw()
    else:
        script =  script + com.im_template() + sc.finalvis() + sc.plotspw()

    if not flagchannels:
        flagchannels = "flagchannels = '0'\n\n"
        splitcomplete = sc.splitcont()  + "      width=[" + width + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"
    else: # use all the spws, not just continuum-dedicated:
        flagchannels = "flagchannels = '" + flagchannels + "'\n\n"
        contspws = "contspws = '" + spwall + "\n"
        splitcomplete = sc.splitcont()  + "      width=[" + widthall + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"

    # 4.4 fixes....
    if project_dict['project_type'] == 'Manual':
        initweights = "initweights(vis=finalvis,wtmode='weight',dowtsp=True)\n\n"
        splitcomplete = sc.splitcont2() + "      width=[" + width + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"
        checkweights = "plotms(vis=contvis, yaxis='wtsp',xaxis='freq',spw='',antenna='DA42',field='%s')\n" % parameters['scifield0'] # how to get the antenna?
        script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.plotspw() + sc.contvis() + splitcomplete + sc.flagrestore() + checkweights + sc.plotuv()
    else:
        script = script + contspws + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + splitcomplete + sc.flagrestore() + sc.plotuv()


    return script
Esempio n. 2
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def make_continuum(script, parameters, project_dict, continfo, comments, template, flagchannels):
    """Write the make a continuum ms portion of the script"""
    width = continfo['width']
    widthall = continfo['widthall']
    if continfo['cont_index'] == continfo['spwall']:
        contspws = "contspws = '" + continfo['cont_index']
    elif continfo['cont_index'] == '':
        contspws = "contspws = '" + continfo['spwall'] + "' # Because there are no continuum-dedicated spws, all of the spws are included. You will need to flag out line emission before proceeding. \n\n"
        width=widthall
    else:
        contspws = "contspws = '" + continfo['cont_index'] + "'\n"
    spwall = continfo['spwall']

    if comments == False:
        script =  script + com.im_template_header() + sc.finalvis() + sc.plotspw() + com.casa_warning()
    else:
        script =  script + com.im_template() + sc.finalvis() + sc.plotspw() + com.casa_warning()

    if not flagchannels:
        flagchannels = "flagchannels = 'specify_channels_to_flag_here' # Example syntax: '2:1201~2199,3:1201~2199'\n\n"
        splitcomplete = sc.splitcont()  + "      width=[" + width + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"
    else: # use all the spws, not just continuum-dedicated:
        flagchannels = "\n# Flag the 'line channels'\nflagchannels = '" + flagchannels + "'#In this example , spws 2&3 have a line between channels 1201 and\n\
# 2199 and spectral windows 0 and 1 are line-free.\n\n" #for the future it may be possible to steal hifa_flagchannels output to find these channels
        contspws = "contspws = '" + spwall + "'\n"
        splitcomplete = sc.splitcont()  + "      width=[" + widthall + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"

    # >= 4.4 fixes....
    initweights = "initweights(vis=finalvis,wtmode='weight',dowtsp=True)\n\n"
    checkweights = "plotms(vis=contvis, yaxis='wtsp',xaxis='freq',spw='',antenna='DA42',field='%s')\n" % parameters['scifield0'] # how to get the antenna?
    casa_version = int(project_dict['casa_version'].replace('.','0')) # replace dots with zeros and convert to int
    if project_dict['project_type'] == 'Manual' or casa_version >= 40400: # or casa version >= 4.4.0
        splitcomplete = sc.splitcont2() + "      width=[" + width + "], # widths for all the spws are [" + widthall + "]\n      datacolumn='data')\n\n"
        script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.plotspw() + sc.contvis() + splitcomplete + sc.flagrestore() + checkweights + sc.plotuv()
    elif template == True:
        script = script + contspws + initweights + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + com.split_versions() + sc.flagrestore() + checkweights + sc.plotuv()
    else:
        script = script + contspws + sc.flags() + flagchannels + sc.flagdata() + sc.contvis() + splitcomplete + sc.flagrestore() + sc.plotuv()

    return script