def test_getAlignmentType_pairIsMismatch(self):
aligned_pair = AlignedPair(query_pos=10, ref_pos=15, ref_base="a")
actual = aligned_pair.get_alignment_type()
expected = AlignmentType.MISMATCH
assert actual == expected
def test_getAlignmentType_pairIsInsertion(self):
aligned_pair = AlignedPair(query_pos=None, ref_pos=10, ref_base="A")
actual = aligned_pair.get_alignment_type()
expected = AlignmentType.INSERTION
assert actual == expected
def test_getAlignmentType_pairIsDeletion(self):
aligned_pair = AlignedPair(query_pos=10, ref_pos=None, ref_base=None)
actual = aligned_pair.get_alignment_type()
expected = AlignmentType.DELETION
assert actual == expected