tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='liver_medium',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='liver_medium',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='pba_spheroidTNF',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='pba_spheroidTNF',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4covid19_sbml',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4covid19_sbml',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
write_config_file(new_config_file)
tdir = os.path.abspath('tmpdir')
os.chdir(tdir) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='pharmacodynamics2GUI',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='pharmacodynamics2GUI',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style='success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
)
write_config_file(new_config_file)
tdir = os.path.abspath('tmpdir')
os.chdir(tdir) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='physicellecm',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='physicellecm',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style='success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
)
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='Cycle_Training',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='Cycle_Training',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
write_config_file(new_config_file)
tdir = os.path.abspath('tmpdir')
os.chdir(tdir) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
cells_tab.update(tdir)
# sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='edu4mechanics',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='edu4mechanics',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style='success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
)
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='trsecretion',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='trsecretion',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
svg.update(tdir)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='NanoHub_Epil_viral_veins_project',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='NanoHub_Epil_viral_veins_project',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
svg.update(tdir)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='tsbiofilmsp19',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='tsbiofilmsp19',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
def outcb(s):
# This is called when new output is received.
# Only update file list for certain messages:
if "simulat" in s:
# New Data. update visualizations
svg.update('')
sub.update('')
return s
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='motility',
showcache=False,
outcb=outcb)
else:
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='motility',
showcache=False,
outcb=outcb)
read_config = widgets.Dropdown(
description='Load Config',
options=get_config_files(),
tooltip='Config File or Previous Run',
)
read_config.style = {
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='Hypoxia_simulator',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='Hypoxia_simulator',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
svg.update(tdir)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='Ulises_app',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='Ulises_app',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='antibacterial',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='antibacterial',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='project_repo_ecm_simul',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='project_repo_ecm_simul',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='virion2receptor',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='virion2receptor',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
# with debug_view:
# print('run_button_cb')
# new_config_file = "config.xml"
new_config_file = full_xml_filename
write_config_file(new_config_file)
# subprocess.call(["biorobots", xml_file_out])
# subprocess.call(["myproj", new_config_file]) # spews to shell, but not ctl-C'able
# subprocess.call(["myproj", new_config_file], shell=True) # no
subprocess.Popen(["myproj", new_config_file])
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='iu399sp19p017',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='iu399sp19p017',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4nanobio',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4nanobio',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
if (os.path.isdir(os.path.join(parent_dir, d)) and d[0] != '.')
]
alldirs.sort()
#basedir = os.path.basename(outdir)
basedir = alldirs[0] # would rather set = the latest created
select_output_dir.options = alldirs
select_output_dir.value = basedir
return
# https://hubzero.github.io/hublib/ui.html#submit
submit_button = Submit(label='Submit',
tooltip='Submit batch run',
start_func=submit_sim_func,
done_func=submit_done_func,
cachename='pc4nanobio')
default_config_button = widgets.Button(
description='Reset defaults',
style={'description_width': 'initial'},
button_style='info', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Populate the GUI with default parameters',
)
default_config_button.on_click(default_config_file_cb)
read_config = widgets.Dropdown(
options=get_config_files(),
tooltip='Config File',
)
# with debug_view:
# print('run_button_cb')
# new_config_file = "config.xml"
new_config_file = full_xml_filename
write_config_file(new_config_file)
# subprocess.call(["biorobots", xml_file_out])
# subprocess.call(["myproj", new_config_file]) # spews to shell, but not ctl-C'able
# subprocess.call(["myproj", new_config_file], shell=True) # no
subprocess.Popen(["myproj", new_config_file])
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4cancerimmune',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='pc4cancerimmune',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',
tdir = os.path.abspath('tmpdir')
os.chdir(
tdir
) # operate from tmpdir; temporary output goes here. may be copied to cache later
# svg.update(tdir)
# sub.update_params(config_tab)
sub.update(tdir)
subprocess.Popen(["../bin/myproj", "config.xml"])
#-------------------------------------------------
if nanoHUB_flag:
run_button = Submit(label='Run',
start_func=run_sim_func,
done_func=run_done_func,
cachename='tr_microenvironment_nanohub',
showcache=False,
outcb=outcb)
else:
if (hublib_flag):
run_button = RunCommand(start_func=run_sim_func,
done_func=run_done_func,
cachename='tr_microenvironment_nanohub',
showcache=False,
outcb=outcb)
else:
run_button = widgets.Button(
description='Run',
button_style=
'success', # 'success', 'info', 'warning', 'danger' or ''
tooltip='Run a simulation',