def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = 'python upload'
run.data_rows = data_rows
run.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties['PropertyName'] = 'Property Value'
self.service = MockSaveBatch()
self.expected_kwargs = {
'expected_args': [self.service.get_server_url()],
'data':
'{"assayId": 12345, "batches": [{"batchProtocolId": 0, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"comment": null, "created": null, "createdBy": null, "dataInputs": [], "dataRows": [], "experiments": [], "filePathRoot": null, "materialInputs": [], "materialOutputs": [], "modified": null, "modifiedBy": null, "name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
'headers': {
'Content-type': 'application/json',
'Accept': 'text/plain'
},
'timeout': 300
}
self.args = [mock_server_context(self.service), assay_id, batch]
def setUp(self):
data_rows = []
# Generate the Run object(s)
run = Run()
run.name = "python upload"
run.data_rows = data_rows
run.properties["RunFieldName"] = "Run Field Value"
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run]
batch.properties["PropertyName"] = "Property Value"
self.service = MockSaveBatch()
self.expected_kwargs = {
"expected_args": [self.service.get_server_url()],
"data":
'{"assayId": 12345, "batches": [{"batchProtocolId": null, "comment": null, "created": null, "createdBy": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}',
"headers": {
"Content-Type": "application/json"
},
"timeout": 300,
}
self.args = [mock_server_context(self.service), assay_id, batch]
def setUp(self):
dataRows = []
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = dataRows
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
# batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
self.configs = configs.copy()
self.service = MockSaveBatch(**self.configs)
self.expected_kwargs = {
'expected_args': [self.service.get_server_url()]
, 'data': '{"assayId": 12345, "batches": [{"batchProtocolId": 0, "comment": null, "created": null, "createdBy": null, "lsid": null, "modified": null, "modifiedBy": null, "name": null, "properties": {"PropertyName": "Property Value"}, "runs": [{"comment": null, "created": null, "createdBy": null, "dataInputs": [], "dataRows": [], "experiments": [], "filePathRoot": null, "lsid": null, "materialInputs": [], "materialOutputs": [], "modified": null, "modifiedBy": null, "name": "python upload", "properties": {"RunFieldName": "Run Field Value"}}]}]}'
, 'headers': {'Content-type': 'application/json', 'Accept': 'text/plain'}
}
self.args = [
server_context, assay_id, batch
]
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear",
},
{
"SampleId": "Monkey 3",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 1.5,
"HiddenData": "jimbo",
},
]
run_test.properties["RunFieldName"] = "Run Field Value"
# Generate the Batch object(s)
batch = Batch()
batch.runs = [run_test]
batch.name = "python batch"
batch.properties["PropertyName"] = "Property Value"
# Execute save api
saved_batch = api.experiment.save_batch(assay_id, batch)
###################
# Load an Assay batch
###################
batch_id = saved_batch.row_id # provide one from your server
run_group = api.experiment.load_batch(assay_id, batch_id)
if run_group is not None:
print("Batch Id: " + str(run_group.id))
'HiddenData': 'another data point'
}, {
'SampleId': 'Monkey 2',
'TimePoint': '2008/11/02 14:00:01',
'DoubleData': 3.1,
'HiddenData': 'fozzy bear'
}, {
'SampleId': 'Monkey 3',
'TimePoint': '2008/11/02 14:00:01',
'DoubleData': 1.5,
'HiddenData': 'jimbo'
}]
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
# Execute save api
saved_batch = save_batch(server_context, assay_id, batch)
###################
# Load an Assay batch
###################
batch_id = saved_batch.row_id # provide one from your server
run_group = load_batch(server_context, assay_id, batch_id)
if run_group is not None:
print("Batch Id: " + str(run_group.id))
}, {
"SampleId": "Monkey 2",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 3.1,
"HiddenData": "fozzy bear"
}, {
"SampleId": "Monkey 3",
"TimePoint": "2008/11/02 14:00:01",
"DoubleData": 1.5,
"HiddenData": "jimbo"
}
]
# Generate the Run object(s)
runTest = Run()
runTest.name = 'python upload'
runTest.data_rows = dataRows
runTest.properties['RunFieldName'] = 'Run Field Value'
# Generate the Batch object(s)
batch = Batch()
batch.runs = [runTest]
batch.name = 'python batch'
batch.properties['PropertyName'] = 'Property Value'
# Execute save api
RESULT = save_batch(server_context, assay_id, batch)
# RESULT = save_batches(server_context, assay_id, [batch1, batch2])
print(RESULT.id)
