def test_ignore(self):
ignore = ['sNp', 'a1']
flag_cnames = {'SNP': 'SNP', 'ASDF': 'ASDF', 'N': 'FOOBAR'}
x = munge.get_cname_map(flag_cnames, munge.default_cnames, ignore)
# check that ignore columns are ignored
nose.tools.assert_raises(KeyError, x.__getitem__, 'SNP')
nose.tools.assert_raises(KeyError, x.__getitem__, 'A1')
# check that flag columns make it into the dict
self.assertEqual(x['ASDF'], 'ASDF')
# check that default columns make it into the dict
self.assertEqual(x['A2'], 'A2')
# check that flags override default
self.assertEqual(x['N'], 'FOOBAR')
def test_ignore(self):
ignore = ['sNp', 'a1']
flag_cnames = {'SNP': 'SNP', 'ASDF': 'ASDF', 'N': 'FOOBAR'}
x = munge.get_cname_map(flag_cnames, munge.default_cnames, ignore)
# check that ignore columns are ignored
nose.tools.assert_raises(KeyError, x.__getitem__, 'SNP')
nose.tools.assert_raises(KeyError, x.__getitem__, 'A1')
# check that flag columns make it into the dict
self.assertEqual(x['ASDF'], 'ASDF')
# check that default columns make it into the dict
self.assertEqual(x['A2'], 'A2')
# check that flags override default
self.assertEqual(x['N'], 'FOOBAR')
def test_no_flags(self):
x = munge.get_cname_map({}, munge.default_cnames, [])
self.assertEqual(x, munge.default_cnames)
def test_no_flags(self):
x = munge.get_cname_map({}, munge.default_cnames, [])
self.assertEqual(x, munge.default_cnames)
