def setUp(self):
self.G = {(1,1): {(2,2): 0.125, (3,3): 0.75}, (2,2): {(1,1): 0.125, (4,4): 1.2},
(3,3): {(1,1): 0.75, (4,4): 0.375},
(4,4): {(2,2): 1.2, (3,3): 0.375, (5,5): 0.5},
(5,5): {(4,4): 0.5}, (6,6):{(7,7):1.0}, (7,7):{(6,6):1.0}}
self.G_meshed = pynet.mesh_network(self.G, 0.1)
self.points = [((3.6666666666666665, 3.6666666666666665), (3.5, 3.5),
1.8011569244041523e-18, 8.0119209423694433e-18),
((4.0, 4.0), (3.8333333333333335, 3.8333333333333335),
6.4354219496947843e-18, 1.3190733783852405e-17),
((6.5999999999999996, 6.5999999999999996), (6.5, 6.5),
8.6525456558003033e-19, 4.0412843678067672e-18)]
self.proj_points = []
for p in self.points:
self.proj_points.append(pynet.proj_pnt_coor(p))
def setUp(self):
self.G = {
(1, 1): {
(2, 2): 0.125,
(3, 3): 0.75
},
(2, 2): {
(1, 1): 0.125,
(4, 4): 1.2
},
(3, 3): {
(1, 1): 0.75,
(4, 4): 0.375
},
(4, 4): {
(2, 2): 1.2,
(3, 3): 0.375,
(5, 5): 0.5
},
(5, 5): {
(4, 4): 0.5
},
(6, 6): {
(7, 7): 1.0
},
(7, 7): {
(6, 6): 1.0
}
}
self.G_meshed = pynet.mesh_network(self.G, 0.1)
self.points = [((3.6666666666666665, 3.6666666666666665), (3.5, 3.5),
1.8011569244041523e-18, 8.0119209423694433e-18),
((4.0, 4.0), (3.8333333333333335, 3.8333333333333335),
6.4354219496947843e-18, 1.3190733783852405e-17),
((6.5999999999999996, 6.5999999999999996), (6.5, 6.5),
8.6525456558003033e-19, 4.0412843678067672e-18)]
self.proj_points = []
for p in self.points:
self.proj_points.append(pynet.proj_pnt_coor(p))
def test_mesh_network(self):
graph = pynet.mesh_network(self.G2, 0.1)
self.assertEqual(len(graph), 41)
medline = db.medline
parser = argparse.ArgumentParser(description='Construct meshterm network for search criteria.')
parser.add_argument('--query', type=str, required=True)
parser.add_argument('--outfile', type=argparse.FileType('wb'), required=True,
default=sys.stdout)
parser.add_argument('--type', type=str, required=False)
if __name__ == '__main__':
args = parser.parse_args()
outfile = args.outfile
type = args.type
print unicode(args.query)
if args.type:
if type=="article":
G = article_network( medline.find( json.loads(args.query) ) )
else:
G = mesh_network( medline.find( json.loads(args.query) ) )
else:
G = mesh_network( medline.find( json.loads(args.query) ) )
print "nodes: ", len(G.nodes())
pickle.dump(G, outfile)
outfile.close()
parser = argparse.ArgumentParser(
description='Construct meshterm network for search criteria.')
parser.add_argument('--query', type=str, required=True)
parser.add_argument('--outfile',
type=argparse.FileType('wb'),
required=True,
default=sys.stdout)
parser.add_argument('--type', type=str, required=False)
if __name__ == '__main__':
args = parser.parse_args()
outfile = args.outfile
type = args.type
print unicode(args.query)
if args.type:
if type == "article":
G = article_network(medline.find(json.loads(args.query)))
else:
G = mesh_network(medline.find(json.loads(args.query)))
else:
G = mesh_network(medline.find(json.loads(args.query)))
print "nodes: ", len(G.nodes())
pickle.dump(G, outfile)
outfile.close()
def test_mesh_network(self):
graph = pynet.mesh_network(self.G2, 0.1)
self.assertEqual(len(graph), 41)
