class HmmscanOutput2align( object ):
## constructor
#
def __init__(self):
self.hmmscanOutputProcess = HmmscanOutputProcessing()
self._inputFile = ""
self._outputFile = ""
## set input file
#
# @param input file input file
#
def setInputFile(self, input):
self._inputFile = input
## set output file
# @param output file output file
#
def setOutputFile(self, output):
self._outputFile = output
##read a hmmscan output file, parse it and, write the corresponding .align file
#
def run( self ):
self.hmmscanOutputProcess.readHmmOutputsAndWriteAlignFile( self._inputFile, self._outputFile )
def __init__(self):
self.hmmscanOutputProcess = HmmscanOutputProcessing()
self._inputFile = ""
self._outputFile = ""
