def copy(self, g):
GenomeBase.copy(self, g)
g.num_populated_areas = self.num_populated_areas
g.num_power_plants = self.num_power_plants
g.loss_network = self.loss_network
if self.proposed_distribution is not None:
g.proposed_distribution = clone_matrix(self.proposed_distribution)
def copy(self, g):
""" Copy the contents to the destination g
:param g: the GTree genome destination
"""
GenomeBase.copy(self, g)
GTreeBase.copy(self, g)
def copy(self, g):
""" Copy the contents to the destination g
:param g: the GTree genome destination
"""
GenomeBase.copy(self, g)
GTreeBase.copy(self, g)
def copy(self, g): """ Copy genome to 'g' """ GenomeBase.copy(self, g) g.ruleSet = self.ruleSet[:] #deep copy g.rulePartition = self.rulePartition[:] #deep copy g.ruleSetSize = self.ruleSetSize g.rule_length = self.rule_length g.examples = self.examples # only a ref to the examples is copied
def copy(self, g):
""" Copy genome to 'g' """
GenomeBase.copy(self, g)
g.ruleSet = self.ruleSet[:] #deep copy
g.rulePartition = self.rulePartition[:] #deep copy
g.ruleSetSize = self.ruleSetSize
g.rule_length = self.rule_length
g.examples = self.examples # only a ref to the examples is copied
def __init__(self, num_populated_areas, num_power_plants):
GenomeBase.__init__(self)
self.proposed_distribution = None
self.num_populated_areas = num_populated_areas
self.num_power_plants = num_power_plants
self.initializator.set(proposed_distribution_initializator)
self.mutator.set(proposed_distribution_mutator)
self.crossover.set(proposed_distribution_crossover)
def __init__(self, loss_network):
GenomeBase.__init__(self)
self.proposed_distribution = None
self.loss_network = loss_network
self.num_populated_areas = len(loss_network)
self.num_power_plants = len(loss_network[0])
self.initializator.set(proposed_distribution_initializator)
self.mutator.set(proposed_distribution_mutator)
self.crossover.set(proposed_distribution_crossover)
def __init__(self, size):
""" The initializator of G1DListModified representation,
size parameter must be specified """
GenomeBase.__init__(self)
self.genomeList = []
self.listSize = size
self.initializator.set(Consts.CDefG1DListInit)
self.mutator.set(Consts.CDefG1DListMutator)
self.crossover.set(Consts.CDefG1DListCrossover)
def __init__(self, height, width, depth):
GenomeBase.__init__(self)
self.gens = np.zeros((height, width, depth))
self.height = height
self.width = width
self.depth = depth
def __init__(self, keys, values, cloning=False, **kwargs):
nstates = kwargs.get('nstates', o.ga.genomes.gmap.nstates)
GenomeBase.__init__(self)
GMapBase.__init__(self, keys, values, nstates)
if not cloning:
self.initializator.set(GMapInitializator)
self.mutator.set(GMapMutator)
self.crossover.set(GMapCrossoverSinglePoint)
self.evaluator.set(GMapEvaluator)
def __init__(self, size):
""" The initializator of G1DListModified representation,
size parameter must be specified """
GenomeBase.__init__(self)
self.genomeList = []
self.listSize = size
self.initializator.set(Consts.CDefG1DListInit)
self.mutator.set(Consts.CDefG1DListMutator)
self.crossover.set(Consts.CDefG1DListCrossover)
def copy(self, g):
""" Copy genome to 'g'
Example:
>>> genome_origin.copy(genome_destination)
:param g: the destination G1DList instance
"""
GenomeBase.copy(self, g)
G1DBase.copy(self, g)
def __init__(self,rule_length): GenomeBase.__init__(self) self.ruleSet = G1DBinaryString(0) self.rulePartition = [] self.ruleSetSize = 0 self.rule_length = rule_length self.examples = [] self.initializator.set(GD1BinaryStringSetInitializator) self.mutator.set(WG1DBinaryStringSetMutatorFlip) self.crossover.set(G1DBinaryStringSetXTwoPoint) self.accuracy = 0.0
def copy(self, g):
""" Copy genome to 'g'
Example:
>>> genome_origin.copy(genome_destination)
:param g: the destination G1DList instance
"""
GenomeBase.copy(self, g)
G1DBase.copy(self, g)
def __init__(self, rule_length):
GenomeBase.__init__(self)
self.ruleSet = G1DBinaryString(0)
self.rulePartition = []
self.ruleSetSize = 0
self.rule_length = rule_length
self.examples = []
self.initializator.set(GD1BinaryStringSetInitializator)
self.mutator.set(WG1DBinaryStringSetMutatorFlip)
self.crossover.set(G1DBinaryStringSetXTwoPoint)
self.accuracy = 0.0
def __init__(self, size=10, cloning=False):
""" The initializator of G1DConnections representation,
size parameter must be specified """
GenomeBase.__init__(self)
G1DBase.__init__(self, size)
genomeList=None
# self.genomeList=np.empty((3,size),dtype=[('from','i'),('to','i'),('weight','f')])
if not cloning:
self.initializator.set(GAnnConsts.CDefG1DConnInit)
self.mutator.set(GAnnConsts.CDefG1DConnMutator)
self.crossover.set(GAnnConsts.CDefG1DConnCrossover)
def copy(self, g):
""" Copy genome to 'g'
Example:
>>> genome_origin.copy(genome_destination)
:param g: the destination G1DConnections instance
"""
GenomeBase.copy(self, g)
#G1DBase.copy(self, g)
g.genomeSize=self.genomeSize
g.genomeList=copy.deepcopy(self.genomeList)
def copy(self, g):
""" Copy genome to 'g'
Example:
>>> genome_origin.copy(genome_destination)
:param g: the destination G2DList instance
"""
GenomeBase.copy(self, g)
g.height = self.height
g.width = self.width
for i in xrange(self.height):
g.genomeList[i] = self.genomeList[i][:]
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G1DConnections\n"
ret += "\tList size:\t %s\n" % (self.getListSize(),)
ret += "\tList:\t\t %s\n\n" % (self.genomeList,)
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G1DBinaryString\n"
ret += "\tString length:\t %s\n" % (self.getListSize(),)
ret += "\tString:\t\t %s\n\n" % (self.getBinary(),)
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G1DListModified\n"
ret += "\tList size:\t %s\n" % (self.listSize,)
ret += "\tList:\t\t %s\n\n" % (self.genomeList,)
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += GTreeBase.__repr__(self)
ret += "\n- GTreeGP\n"
ret += "\tExpression: %s\n" % self.getPreOrderExpression()
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G1DList\n"
ret += "\tList size:\t %s\n" % (self.getListSize(),)
ret += "\tList:\t\t %s\n\n" % (self.genomeList,)
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += GTreeBase.__repr__(self)
ret += "\n- GTreeGP\n"
ret += "\tExpression: %s\n" % self.getPreOrderExpression()
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G1DBinaryStringSet\n"
ret += "\tString length:\t %s\n" % (self.ruleSetSize, )
ret += "\tString:\t\t %s\n" % (self.getBinary(), )
ret += "\tRule Partitions: %s\n\n" % (self.rulePartition, )
return ret
def copy(self, g):
""" Copy genome to 'g'
Example:
>>> g1 = G1DBinaryString(2)
>>> g1.append(0)
>>> g1.append(1)
>>> g2 = G1DBinaryString(2)
>>> g1.copy(g2)
>>> g2[1]
1
:param g: the destination genome
"""
GenomeBase.copy(self, g)
G1DBase.copy(self, g)
def __repr__(self): """ Return a string representation of Genome """ ret = GenomeBase.__repr__(self) ret += "- G1DBinaryStringSet\n" ret += "\tString length:\t %s\n" % (self.ruleSetSize,) ret += "\tString:\t\t %s\n" % (self.getBinary(),) ret += "\tRule Partitions: %s\n\n" %(self.rulePartition,) return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += "- G2DList\n"
ret += "\tList size:\t %s\n" % (self.getSize(),)
ret += "\tList:\n"
for line in self.genomeList:
ret += "\t\t\t"
for item in line:
ret += "[%s] " % (item)
ret += "\n"
ret += "\n"
return ret
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += GTreeBase.__repr__(self)
return ret
def copy(self, g):
GenomeBase.copy(self, g)
GMapBase.copy(self, g)
def copy(self, g):
""" Copy genome to 'g' """
GenomeBase.copy(self, g)
g.height = self.height
g.width = self.width
g.depth = self.depth
def copy(self, g): """Copy method required by pyevolve""" GenomeBase.copy(self, g) g.bg = self.bg g.shapes = self.shapes[:] g.target = self.target
def __repr__(self):
r = GenomeBase.__repr__(self)
r += "Polygons:\n"
for t in self.shapes:
r += '\t' + str(t) + '\n'
return r
def __init__(self, target): GenomeBase.__init__(self) self.width, self.height = target.target.size self.target = target self.shapes= [] self.bg=(0,0,0)
def copy(self, g):
GenomeBase.copy(self, g)
g.listSize = self.listSize
g.genomeList = self.genomeList[:]
def copy(self, g):
GenomeBase.copy(self, g)
g.listSize = self.listSize
g.genomeList = self.genomeList[:]
def __repr__(self):
""" Return a string representation of Genome """
ret = GenomeBase.__repr__(self)
ret += GTreeBase.__repr__(self)
return ret
