def mc_replicate_jvb(R0,U0,pVec0,detectorGeom,planeData,omeMin,omeMax,stdev = rad(.1),tweak = False):
import detector
import spotFinder
import grain_wrap_precession as gw
import grain as G
import valUnits
angles = MC_make_angles_jvb(R0,U0,pVec0,detectorGeom, planeData,omeMin,omeMax,stdev = stdev, tweak = tweak)
spotsForFit = spotFinder.Spots(planeData, angles.T, detectorGeom, (omeMin, omeMax))
grain = G.Grain(spotsForFit,
rMat=R0,
pVec=pVec0,
etaTol=valUnits.valWUnit('etaTol', 'angle', 1.0, 'degrees'),
omeTol=valUnits.valWUnit('omeTol', 'angle', 1.0, 'degrees'))
grain_wrap = gw.grainStrainAnalysis(grain)
grain_wrap.assignUncertainties_angles(1e-4,1e-4,1e-2,1e-5,1e-5,1e-3)
return grain_wrap, grain, angles
def mc_replicate(R0,U0,pVec0,detectorGeom,planeData,omeMin,omeMax,stdev = rad(.1),tweak = False):
import detector
import spotFinder
import grain_wrap_precession as gw
import grain as G
import valUnits
angles = MC_make_angles_(R0,U0,pVec0,detectorGeom, planeData,omeMin,omeMax,stdev = stdev, tweak = tweak)
all_angs = []
for key in angles.keys():
angsol, unc = angles[key]
all_angs.append(angsol)
all_angs_ = num.array(all_angs)
spotsForFit = spotFinder.Spots(planeData, all_angs_, detectorGeom, (omeMin, omeMax))
grain = G.Grain(spotsForFit,
rMat=R0,
pVec=pVec0,
etaTol=valUnits.valWUnit('etaTol', 'angle', 1.0, 'degrees'),
omeTol=valUnits.valWUnit('omeTol', 'angle', 1.0, 'degrees'))
grain_wrap = gw.grainStrainAnalysis(grain)
grain_wrap.assignUncertainties_angles(1e-4,1e-4,1e-2,1e-5,1e-5,1e-3)
return grain_wrap, grain, all_angs_
def mc_replicate_nrb(R0,U0,pVec0,detectorGeom,planeData,omeMin,omeMax,tweak = False, stdev = rad(.1),angle_stdev_fact = 10):
import detector
import spotFinder
import grain_wrap_precession as gw
import grain as G
import valUnits
print 'making angles'
angles,ang_dev = MC_make_angles_nrb(R0,U0,pVec0,detectorGeom, planeData,omeMin,omeMax,stdev = stdev, tweak = tweak)
spotsForFit = spotFinder.Spots(planeData, angles, detectorGeom, (omeMin, omeMax))
grain = G.Grain(spotsForFit,
rMat=R0,
pVec=pVec0,
etaTol=valUnits.valWUnit('etaTol', 'angle', 1.0, 'degrees'),
omeTol=valUnits.valWUnit('omeTol', 'angle', 1.0, 'degrees'))
grain_wrap = gw.grainStrainAnalysis(grain)
#grain_wrap.assignUncertainties_angles(1e-4,1e-4,1e-2,1e-5,1e-5,1e-3)
an1 = angle_stdev_fact*stdev
an2 = angle_stdev_fact*stdev
an3 = angle_stdev_fact*10*stdev
st1 = .1*an1
st2 = .1*an2
st3 = .1*an3
grain_wrap.assignUncertainties_angles(an1,an2,an3,st1,st2,st3)
return grain_wrap, grain, angles
def MC_make_angles_jvb(R,U,pVec,detectorGeom,planeData,omeMin,omeMax,tweak = False, stdev = rad(0.1)):
wlen = planeData.get_wavelength()
refCell = planeData.getLatticeOperators()['dparms']
refBmat = planeData.getLatticeOperators()['B']
laueGroup = 'd3d'
tThMax = valUnits.valWUnit('tThMax', 'angle', detectorGeom.getTThMax(), 'radians')
# set exclusions and strain mag in planeData
planeData.exclusions = num.where(planeData.getTTh() > tThMax.getVal('radians'))[0]
planeData.strainMag = 1e-2
# full set of symmetric HKLs subject to exclusions
fHKLs = num.hstack(planeData.getSymHKLs())
bMat = refBmat
qVec, qAng0, qAng1 = planeData.makeScatteringVectors(fHKLs, R, bMat, wlen)
validAng0 = num.zeros(qVec.shape[1], dtype='bool')
validAng1 = num.zeros(qVec.shape[1], dtype='bool')
if hasattr(omeMin, '__len__'):
for j in range(len(omeMin)):
validAng0 = validAng0 | (
( qAng0[2, :] >= omeMin[j].getVal('radians') ) & ( qAng0[2, :] <= omeMax[j].getVal('radians') ) )
validAng1 = validAng1 | (
( qAng1[2, :] >= omeMin[j].getVal('radians') ) & ( qAng1[2, :] <= omeMax[j].getVal('radians') ) )
else:
validAng0 = ( qAng0[2, :] >= omeMin.getVal('radians') ) & ( qAng0[2, :] <= omeMax.getVal('radians') )
validAng1 = ( qAng1[2, :] >= omeMin.getVal('radians') ) & ( qAng1[2, :] <= omeMax.getVal('radians') )
tmpAngs = num.hstack( [
qAng0[:, validAng0], qAng1[:, validAng1] ] )
tmpDG = detector.DetectorGeomGE(detectorGeom, pVec=pVec)
tmpX, tmpY, tmpO = tmpDG.angToXYO(tmpAngs[0, :], tmpAngs[1, :], tmpAngs[2, :])
tmpTTh, tmpEta, tmpOme = detectorGeom.xyoToAng(tmpX, tmpY, tmpO)
tmpAngs = num.vstack([tmpTTh, tmpEta, tmpOme])
if tweak:
pert = numpy.random.normal(num.zeros(tmpAngs.shape), num.zeros(tmpAngs.shape)+stdev)
tmpAngs = tmpAngs+pert
spotAngs = tmpAngs
return spotAngs