Esempio n. 1
0
def test_intra_sampling():

    np.random.seed(1234)

    d1 = np.random.multivariate_normal(mean=[-1,1], cov=[[1, 0],[0, 1]], size=3)
    d2 = np.random.multivariate_normal(mean=[2,-2], cov=[[1, 0],[0, 1]], size=4)

    d = np.vstack((d1, d2))
    y = np.array([1,1,1, 2,2,2,2])

    sam_obj = pds(d, y)

    ds1 = sam_obj.intra_sampler(1, size=None)
    assert(ds1.shape[0]) == 3

    ds2 = sam_obj.intra_sampler(2, size=None)
    assert(ds2.shape[0]) == 6


    #def test_intra_Sampling_string():
    d = np.array(["TTTA", "TGTT", "TAAT", "GTTA", "GGCG"])
    y = np.array(["c1", "c1", "c1", "c1", "c2"])

    sam_obj = pds(d, y)

    ds3 = sam_obj.intra_sampler("c1", size=None, method="editdist")
    assert(ds3.shape[0]) == 6
Esempio n. 2
0
def test_inter_sampling():

    np.random.seed(1234)

    d1 = np.random.multivariate_normal(mean=[-1,1], cov=[[1, 0],[0, 1]], size=3)
    d2 = np.random.multivariate_normal(mean=[2,-2], cov=[[1, 0],[0, 1]], size=4)

    d = np.vstack((d1, d2))
    y = np.array([1,1,1, 2,2,2,2])

    sam_obj = pds(d, y)

    ds1 = sam_obj.inter_sampler(1, size=None)
    assert(ds1.shape[0]) == 12