def ispyb_object():
assert os.path.exists("xia2.json")
assert os.path.exists("xia2.txt")
command_line = ""
for record in open("xia2.txt"):
if record.startswith("Command line:"):
command_line = record.replace("Command line:", "").strip()
xinfo = XProject.from_json(filename="xia2.json")
crystals = xinfo.get_crystals()
assert len(crystals) == 1
crystal = next(iter(crystals.values()))
ispyb_hdl = ISPyBXmlHandler(xinfo)
ispyb_hdl.add_xcrystal(crystal)
return ispyb_hdl.json_object(command_line=command_line)
def ispyb_object():
from xia2.Interfaces.ISPyB.ISPyBXmlHandler import ISPyBXmlHandler
assert os.path.exists("xia2.json")
assert os.path.exists("xia2.txt")
command_line = ""
for record in open("xia2.txt"):
if record.startswith("Command line:"):
command_line = record.replace("Command line:", "").strip()
xinfo = XProject.from_json(filename="xia2.json")
crystals = xinfo.get_crystals()
assert len(crystals) == 1
crystal = next(crystals.itervalues())
ISPyBXmlHandler.add_xcrystal(crystal)
return ISPyBXmlHandler.json_object(command_line=command_line)
def ispyb_xml(xml_out):
from xia2.Interfaces.ISPyB.ISPyBXmlHandler import ISPyBXmlHandler
import os
assert os.path.exists('xia2.json')
assert os.path.exists('xia2.txt')
command_line = ''
for record in open('xia2.txt'):
if record.startswith('Command line:'):
command_line = record.replace('Command line:', '').strip()
from xia2.Schema.XProject import XProject
xinfo = XProject.from_json(filename='xia2.json')
crystals = xinfo.get_crystals()
assert len(crystals) == 1
crystal = next(crystals.itervalues())
ISPyBXmlHandler.add_xcrystal(crystal)
ISPyBXmlHandler.write_xml(xml_out, command_line)
def ispyb_xml(xml_out):
from xia2.Interfaces.ISPyB.ISPyBXmlHandler import ISPyBXmlHandler
import os
assert os.path.exists('xia2.json')
assert os.path.exists('xia2.txt')
command_line = ''
for record in open('xia2.txt'):
if record.startswith('Command line:'):
command_line = record.replace('Command line:', '').strip()
from xia2.Schema.XProject import XProject
xinfo = XProject.from_json(filename='xia2.json')
crystals = xinfo.get_crystals()
assert len(crystals) == 1
crystal = next(crystals.itervalues())
ISPyBXmlHandler.add_xcrystal(crystal)
ISPyBXmlHandler.write_xml(xml_out, command_line)
def ispyb_xml(xml_out):
assert os.path.exists("xia2.json")
assert os.path.exists("xia2.txt")
assert os.path.exists("xia2-working.phil")
command_line = ""
for record in open("xia2.txt"):
if record.startswith("Command line:"):
command_line = record.replace("Command line:", "").strip()
with open("xia2-working.phil", "rb") as f:
working_phil = iotbx.phil.parse(f.read())
xinfo = XProject.from_json(filename="xia2.json")
crystals = xinfo.get_crystals()
assert len(crystals) == 1
crystal = next(crystals.itervalues())
ISPyBXmlHandler.add_xcrystal(crystal)
ISPyBXmlHandler.write_xml(xml_out, command_line, working_phil=working_phil)